Phenotype Library | phenotype: Splenomegaly

Splenomegaly

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type

Disease or Syndrome

PH312

Version ID

624

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

Female, Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Tags /Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Splenomegaly IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Splenomegaly diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of Splenomegaly or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/911

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1579/4297 Splenomegaly - Primary care - Read codes v2

Rows: 8

Code	Description	Disease	Medcode	Category
D414.00	Hypersplenism	Splenomegaly	10702.0	Diagnosis of Splenomegaly
D415100	Chronic congestive splenamegaly	Splenomegaly	96439.0	Diagnosis of Splenomegaly
J61y200	Hepatosplenomegaly	Splenomegaly	1780.0	Diagnosis of Splenomegaly
PK03.00	Congenital splenomegaly	Splenomegaly	59741.0	Diagnosis of Splenomegaly
PK03.11	Hyperplasia of spleen	Splenomegaly	62455.0	Diagnosis of Splenomegaly
R092.00	[D]Splenomegaly	Splenomegaly	3125.0	Diagnosis of Splenomegaly
R092000	[D]Spleen enlargement	Splenomegaly	29832.0	Diagnosis of Splenomegaly
R092z00	[D]Splenomegaly NOS	Splenomegaly	44281.0	Diagnosis of Splenomegaly

C1580/4299 Splenomegaly - Primary care - Med codes

Rows: 8

Code	Description	Disease	ReadcodeDescr	Readcode
10702.0	Diagnosis of Splenomegaly	Splenomegaly	Hypersplenism	D414.00
1780.0	Diagnosis of Splenomegaly	Splenomegaly	Hepatosplenomegaly	J61y200
29832.0	Diagnosis of Splenomegaly	Splenomegaly	[D]Spleen enlargement	R092000
3125.0	Diagnosis of Splenomegaly	Splenomegaly	[D]Splenomegaly	R092.00
44281.0	Diagnosis of Splenomegaly	Splenomegaly	[D]Splenomegaly NOS	R092z00
59741.0	Diagnosis of Splenomegaly	Splenomegaly	Congenital splenomegaly	PK03.00
62455.0	Diagnosis of Splenomegaly	Splenomegaly	Hyperplasia of spleen	PK03.11
96439.0	Diagnosis of Splenomegaly	Splenomegaly	Chronic congestive splenamegaly	D415100

C1581/4301 Splenomegaly - Secondary care - Diagnoses - ICD10 codes

Rows: 4

Code	Description	Disease	Category
D73.1	Hypersplenism	Splenomegaly	Diagnosis of Splenomegaly
D73.2	Chronic congestive splenomegaly	Splenomegaly	Diagnosis of Splenomegaly
R16.1	Splenomegaly, not elsewhere classified	Splenomegaly	Diagnosis of Splenomegaly
R16.2	Hepatomegaly with splenomegaly, not elsewhere classified	Splenomegaly	Diagnosis of Splenomegaly

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH312/version/624/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH312/version/624/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH312', '624', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH312/version/624/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH312/version/624/export/codes/?format=json
CSV	site_root/phenotypes/PH312/version/624/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH312', '624', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
624	Splenomegaly	ieuan.scanlon	2021-10-06	currently shown