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Systemic sclerosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH318
Version ID
636
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Systemic sclerosis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Systemic sclerosis diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Systemic sclerosis or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 11
Code Description Disease Medcode Category
F396600 Myopathy due to scleroderma Systemic sclerosis 55601.0 Diagnosis of Systemic sclerosis
H572.00 Lung disease with systemic sclerosis Systemic sclerosis 94996.0 Diagnosis of Systemic sclerosis
K0H..00 Acute scleroderma renal crisis Systemic sclerosis 105976.0 Diagnosis of Systemic sclerosis
K0J0.00 Renal involvement in scleroderma Systemic sclerosis 107382.0 Diagnosis of Systemic sclerosis
N001.00 Scleroderma Systemic sclerosis 3670.0 Diagnosis of Systemic sclerosis
N001.11 Acrosclerosis Systemic sclerosis 68277.0 Diagnosis of Systemic sclerosis
N001.12 Systemic sclerosis Systemic sclerosis 28417.0 Diagnosis of Systemic sclerosis
N001000 Progressive systemic sclerosis Systemic sclerosis 44141.0 Diagnosis of Systemic sclerosis
N001100 CREST syndrome Systemic sclerosis 17675.0 Diagnosis of Systemic sclerosis
N001200 Systemic sclerosis induced by drugs and chemicals Systemic sclerosis 110174.0 Diagnosis of Systemic sclerosis
Nyu4500 [X]Other forms of systemic sclerosis Systemic sclerosis 71763.0 Diagnosis of Systemic sclerosis
Rows: 11
Code Description Disease ReadcodeDescr Readcode
105976.0 Diagnosis of Systemic sclerosis Systemic sclerosis Acute scleroderma renal crisis K0H..00
107382.0 Diagnosis of Systemic sclerosis Systemic sclerosis Renal involvement in scleroderma K0J0.00
110174.0 Diagnosis of Systemic sclerosis Systemic sclerosis Systemic sclerosis induced by drugs and chemicals N001200
17675.0 Diagnosis of Systemic sclerosis Systemic sclerosis CREST syndrome N001100
28417.0 Diagnosis of Systemic sclerosis Systemic sclerosis Systemic sclerosis N001.12
3670.0 Diagnosis of Systemic sclerosis Systemic sclerosis Scleroderma N001.00
44141.0 Diagnosis of Systemic sclerosis Systemic sclerosis Progressive systemic sclerosis N001000
55601.0 Diagnosis of Systemic sclerosis Systemic sclerosis Myopathy due to scleroderma F396600
68277.0 Diagnosis of Systemic sclerosis Systemic sclerosis Acrosclerosis N001.11
71763.0 Diagnosis of Systemic sclerosis Systemic sclerosis [X]Other forms of systemic sclerosis Nyu4500
94996.0 Diagnosis of Systemic sclerosis Systemic sclerosis Lung disease with systemic sclerosis H572.00
Rows: 1
Code Description Disease Category
M34 Systemic sclerosis Systemic sclerosis Diagnosis of Systemic sclerosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH318/version/636/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH318/version/636/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH318', '636', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH318/version/636/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH318/version/636/export/codes/?format=json
CSV site_root/phenotypes/PH318/version/636/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH318', '636', api_client=client)

Version History

Version
ID
Name Owner Publish date
636 Systemic sclerosis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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