Phenotype Library | phenotype: Systemic sclerosis

Systemic sclerosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH318

Version ID

636

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Systemic sclerosis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Systemic sclerosis diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of Systemic sclerosis or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/928

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1597/4333 Systemic sclerosis - Primary care - Read codes v2

Rows: 11

Code	Description	Disease	Medcode	Category
F396600	Myopathy due to scleroderma	Systemic sclerosis	55601.0	Diagnosis of Systemic sclerosis
H572.00	Lung disease with systemic sclerosis	Systemic sclerosis	94996.0	Diagnosis of Systemic sclerosis
K0H..00	Acute scleroderma renal crisis	Systemic sclerosis	105976.0	Diagnosis of Systemic sclerosis
K0J0.00	Renal involvement in scleroderma	Systemic sclerosis	107382.0	Diagnosis of Systemic sclerosis
N001.00	Scleroderma	Systemic sclerosis	3670.0	Diagnosis of Systemic sclerosis
N001.11	Acrosclerosis	Systemic sclerosis	68277.0	Diagnosis of Systemic sclerosis
N001.12	Systemic sclerosis	Systemic sclerosis	28417.0	Diagnosis of Systemic sclerosis
N001000	Progressive systemic sclerosis	Systemic sclerosis	44141.0	Diagnosis of Systemic sclerosis
N001100	CREST syndrome	Systemic sclerosis	17675.0	Diagnosis of Systemic sclerosis
N001200	Systemic sclerosis induced by drugs and chemicals	Systemic sclerosis	110174.0	Diagnosis of Systemic sclerosis
Nyu4500	[X]Other forms of systemic sclerosis	Systemic sclerosis	71763.0	Diagnosis of Systemic sclerosis

C1598/4335 Systemic sclerosis - Primary care - Med codes

Rows: 11

Code	Description	Disease	ReadcodeDescr	Readcode
105976.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Acute scleroderma renal crisis	K0H..00
107382.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Renal involvement in scleroderma	K0J0.00
110174.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Systemic sclerosis induced by drugs and chemicals	N001200
17675.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	CREST syndrome	N001100
28417.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Systemic sclerosis	N001.12
3670.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Scleroderma	N001.00
44141.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Progressive systemic sclerosis	N001000
55601.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Myopathy due to scleroderma	F396600
68277.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Acrosclerosis	N001.11
71763.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	[X]Other forms of systemic sclerosis	Nyu4500
94996.0	Diagnosis of Systemic sclerosis	Systemic sclerosis	Lung disease with systemic sclerosis	H572.00

C1599/4337 Systemic sclerosis - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
M34	Systemic sclerosis	Systemic sclerosis	Diagnosis of Systemic sclerosis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH318/version/636/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH318/version/636/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH318', '636', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH318/version/636/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH318/version/636/export/codes/?format=json
CSV	site_root/phenotypes/PH318/version/636/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH318', '636', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
636	Systemic sclerosis	ieuan.scanlon	2021-10-06	currently shown