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Thalassaemia trait

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH319
Version ID
638
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Thalassaemia trait' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Thalassaemia trait' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Thalassaemia trait' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 4
Code Description Disease Medcode Category
D104100 Thalassaemia minor NEC Thalassaemia trait 1174.0 Diagnosis of Thalassaemia trait
D104400 Alpha trait thalassaemia Thalassaemia trait 12235.0 Diagnosis of Thalassaemia trait
D104500 Beta trait thalassaemia Thalassaemia trait 9864.0 Diagnosis of Thalassaemia trait
D104800 Beta minor thalassaemia Thalassaemia trait 27761.0 Diagnosis of Thalassaemia trait
Rows: 4
Code Description Disease ReadcodeDescr Readcode
1174.0 Diagnosis of Thalassaemia trait Thalassaemia trait Thalassaemia minor NEC D104100
12235.0 Diagnosis of Thalassaemia trait Thalassaemia trait Alpha trait thalassaemia D104400
27761.0 Diagnosis of Thalassaemia trait Thalassaemia trait Beta minor thalassaemia D104800
9864.0 Diagnosis of Thalassaemia trait Thalassaemia trait Beta trait thalassaemia D104500
Rows: 1
Code Description Disease Category
D56.3 Thalassaemia trait Thalassaemia trait Diagnosis of Thalassaemia trait

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH319/version/638/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH319/version/638/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH319', '638', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH319/version/638/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH319/version/638/export/codes/?format=json
CSV site_root/phenotypes/PH319/version/638/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH319', '638', api_client=client)

Version History

Version
ID
Name Owner Publish date
638 Thalassaemia trait ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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