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Ulcerative colitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH326
Version ID
652
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Ulcerative colitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Ulcerative colitis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Ulcerative colitis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 20
Code Description Disease Medcode Category
14C4.11 H/O: ulcerative colitis Ulcerative colitis 5749.0 History of Ulcerative colitis
J41..00 Idiopathic proctocolitis Ulcerative colitis 5133.0 Diagnosis of Ulcerative colitis
J41..11 Mucous colitis and/or proctitis Ulcerative colitis 23950.0 Diagnosis of Ulcerative colitis
J41..12 Ulcerative colitis and/or proctitis Ulcerative colitis 1784.0 Diagnosis of Ulcerative colitis
J410.00 Ulcerative proctocolitis Ulcerative colitis 6650.0 Diagnosis of Ulcerative colitis
J410000 Ulcerative ileocolitis Ulcerative colitis 48732.0 Diagnosis of Ulcerative colitis
J410100 Ulcerative colitis Ulcerative colitis 704.0 Diagnosis of Ulcerative colitis
J410200 Ulcerative rectosigmoiditis Ulcerative colitis 24858.0 Diagnosis of Ulcerative colitis
J410300 Ulcerative proctitis Ulcerative colitis 8347.0 Diagnosis of Ulcerative colitis
J410400 Exacerbation of ulcerative colitis Ulcerative colitis 22516.0 Diagnosis of Ulcerative colitis
J410z00 Ulcerative proctocolitis NOS Ulcerative colitis 33456.0 Diagnosis of Ulcerative colitis
J411.00 Ulcerative (chronic) enterocolitis Ulcerative colitis 30433.0 Diagnosis of Ulcerative colitis
J412.00 Ulcerative (chronic) ileocolitis Ulcerative colitis 42822.0 Diagnosis of Ulcerative colitis
J413.00 Ulcerative pancolitis Ulcerative colitis 104259.0 Diagnosis of Ulcerative colitis
J41y.00 Other idiopathic proctocolitis Ulcerative colitis 24550.0 Diagnosis of Ulcerative colitis
J41yz00 Other idiopathic proctocolitis NOS Ulcerative colitis 43090.0 Diagnosis of Ulcerative colitis
J41z.00 Idiopathic proctocolitis NOS Ulcerative colitis 15207.0 Diagnosis of Ulcerative colitis
Jyu4100 [X]Other ulcerative colitis Ulcerative colitis 53743.0 Diagnosis of Ulcerative colitis
N031000 Arthropathy in ulcerative colitis Ulcerative colitis 17641.0 History of Ulcerative colitis
N045400 Juvenile arthritis in ulcerative colitis Ulcerative colitis 71083.0 History of Ulcerative colitis
Rows: 20
Code Description Disease ReadcodeDescr Readcode
104259.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative pancolitis J413.00
15207.0 Diagnosis of Ulcerative colitis Ulcerative colitis Idiopathic proctocolitis NOS J41z.00
17641.0 History of Ulcerative colitis Ulcerative colitis Arthropathy in ulcerative colitis N031000
1784.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative colitis and/or proctitis J41..12
22516.0 Diagnosis of Ulcerative colitis Ulcerative colitis Exacerbation of ulcerative colitis J410400
23950.0 Diagnosis of Ulcerative colitis Ulcerative colitis Mucous colitis and/or proctitis J41..11
24550.0 Diagnosis of Ulcerative colitis Ulcerative colitis Other idiopathic proctocolitis J41y.00
24858.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative rectosigmoiditis J410200
30433.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative (chronic) enterocolitis J411.00
33456.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative proctocolitis NOS J410z00
42822.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative (chronic) ileocolitis J412.00
43090.0 Diagnosis of Ulcerative colitis Ulcerative colitis Other idiopathic proctocolitis NOS J41yz00
48732.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative ileocolitis J410000
5133.0 Diagnosis of Ulcerative colitis Ulcerative colitis Idiopathic proctocolitis J41..00
53743.0 Diagnosis of Ulcerative colitis Ulcerative colitis [X]Other ulcerative colitis Jyu4100
5749.0 History of Ulcerative colitis Ulcerative colitis H/O: ulcerative colitis 14C4.11
6650.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative proctocolitis J410.00
704.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative colitis J410100
71083.0 History of Ulcerative colitis Ulcerative colitis Juvenile arthritis in ulcerative colitis N045400
8347.0 Diagnosis of Ulcerative colitis Ulcerative colitis Ulcerative proctitis J410300
Rows: 1
Code Description Disease Category
K51 Ulcerative colitis Ulcerative colitis Diagnosis of Ulcerative colitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH326/version/652/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH326/version/652/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH326', '652', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH326/version/652/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH326/version/652/export/codes/?format=json
CSV site_root/phenotypes/PH326/version/652/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH326', '652', api_client=client)

Version History

Version
ID
Name Owner Publish date
652 Ulcerative colitis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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