Phenotype Library | phenotype: Ulcerative colitis

Ulcerative colitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH326

Version ID

652

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Ulcerative colitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Ulcerative colitis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Ulcerative colitis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/952

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1621/4381 Ulcerative colitis - Primary care - Read codes v2

Rows: 20

Code	Description	Disease	Medcode	Category
14C4.11	H/O: ulcerative colitis	Ulcerative colitis	5749.0	History of Ulcerative colitis
J41..00	Idiopathic proctocolitis	Ulcerative colitis	5133.0	Diagnosis of Ulcerative colitis
J41..11	Mucous colitis and/or proctitis	Ulcerative colitis	23950.0	Diagnosis of Ulcerative colitis
J41..12	Ulcerative colitis and/or proctitis	Ulcerative colitis	1784.0	Diagnosis of Ulcerative colitis
J410.00	Ulcerative proctocolitis	Ulcerative colitis	6650.0	Diagnosis of Ulcerative colitis
J410000	Ulcerative ileocolitis	Ulcerative colitis	48732.0	Diagnosis of Ulcerative colitis
J410100	Ulcerative colitis	Ulcerative colitis	704.0	Diagnosis of Ulcerative colitis
J410200	Ulcerative rectosigmoiditis	Ulcerative colitis	24858.0	Diagnosis of Ulcerative colitis
J410300	Ulcerative proctitis	Ulcerative colitis	8347.0	Diagnosis of Ulcerative colitis
J410400	Exacerbation of ulcerative colitis	Ulcerative colitis	22516.0	Diagnosis of Ulcerative colitis
J410z00	Ulcerative proctocolitis NOS	Ulcerative colitis	33456.0	Diagnosis of Ulcerative colitis
J411.00	Ulcerative (chronic) enterocolitis	Ulcerative colitis	30433.0	Diagnosis of Ulcerative colitis
J412.00	Ulcerative (chronic) ileocolitis	Ulcerative colitis	42822.0	Diagnosis of Ulcerative colitis
J413.00	Ulcerative pancolitis	Ulcerative colitis	104259.0	Diagnosis of Ulcerative colitis
J41y.00	Other idiopathic proctocolitis	Ulcerative colitis	24550.0	Diagnosis of Ulcerative colitis
J41yz00	Other idiopathic proctocolitis NOS	Ulcerative colitis	43090.0	Diagnosis of Ulcerative colitis
J41z.00	Idiopathic proctocolitis NOS	Ulcerative colitis	15207.0	Diagnosis of Ulcerative colitis
Jyu4100	[X]Other ulcerative colitis	Ulcerative colitis	53743.0	Diagnosis of Ulcerative colitis
N031000	Arthropathy in ulcerative colitis	Ulcerative colitis	17641.0	History of Ulcerative colitis
N045400	Juvenile arthritis in ulcerative colitis	Ulcerative colitis	71083.0	History of Ulcerative colitis

C1622/4383 Ulcerative colitis - Primary care - Med codes

Rows: 20

Code	Description	Disease	ReadcodeDescr	Readcode
104259.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative pancolitis	J413.00
15207.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Idiopathic proctocolitis NOS	J41z.00
17641.0	History of Ulcerative colitis	Ulcerative colitis	Arthropathy in ulcerative colitis	N031000
1784.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative colitis and/or proctitis	J41..12
22516.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Exacerbation of ulcerative colitis	J410400
23950.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Mucous colitis and/or proctitis	J41..11
24550.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Other idiopathic proctocolitis	J41y.00
24858.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative rectosigmoiditis	J410200
30433.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative (chronic) enterocolitis	J411.00
33456.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative proctocolitis NOS	J410z00
42822.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative (chronic) ileocolitis	J412.00
43090.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Other idiopathic proctocolitis NOS	J41yz00
48732.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative ileocolitis	J410000
5133.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Idiopathic proctocolitis	J41..00
53743.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	[X]Other ulcerative colitis	Jyu4100
5749.0	History of Ulcerative colitis	Ulcerative colitis	H/O: ulcerative colitis	14C4.11
6650.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative proctocolitis	J410.00
704.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative colitis	J410100
71083.0	History of Ulcerative colitis	Ulcerative colitis	Juvenile arthritis in ulcerative colitis	N045400
8347.0	Diagnosis of Ulcerative colitis	Ulcerative colitis	Ulcerative proctitis	J410300

C1623/4385 Ulcerative colitis - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K51	Ulcerative colitis	Ulcerative colitis	Diagnosis of Ulcerative colitis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH326/version/652/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH326/version/652/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH326', '652', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH326/version/652/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH326/version/652/export/codes/?format=json
CSV	site_root/phenotypes/PH326/version/652/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH326', '652', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
652	Ulcerative colitis	ieuan.scanlon	2021-10-06	currently shown