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Undescended testicle

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH328
Version ID
656
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Undescended testicle IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Undescended testicle diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Undescended testicle or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 16
Code Description Disease Medcode Category
B470.00 Malignant neoplasm of undescended testis Undescended testicle 64602.0 History of Undescended testicle
B470200 Seminoma of undescended testis Undescended testicle 7740.0 History of Undescended testicle
B470300 Teratoma of undescended testis Undescended testicle 36325.0 History of Undescended testicle
B470z00 Malignant neoplasm of undescended testis NOS Undescended testicle 96429.0 History of Undescended testicle
PC5..00 Undescended testicle Undescended testicle 634.0 Diagnosis of Undescended testicle
PC50.00 Cryptorchidism Undescended testicle 10965.0 Diagnosis of Undescended testicle
PC50000 Cryptorchidism, unilateral Undescended testicle 44918.0 Diagnosis of Undescended testicle
PC50100 Cryptorchidism, bilateral Undescended testicle 47565.0 Diagnosis of Undescended testicle
PC50z00 Cryptorchidism NOS Undescended testicle 33424.0 Diagnosis of Undescended testicle
PC51.00 Ectopic testis Undescended testicle 5241.0 Diagnosis of Undescended testicle
PC5z.00 Undescended testicle NOS Undescended testicle 28215.0 Diagnosis of Undescended testicle
PC5z.12 Maldescent of testicle Undescended testicle 12695.0 Diagnosis of Undescended testicle
PC5z000 Undescended testis, unilateral Undescended testicle 6794.0 Diagnosis of Undescended testicle
PC5z011 Maldescent of testis, unilateral Undescended testicle 46552.0 Diagnosis of Undescended testicle
PC5z100 Undescended testis, bilateral Undescended testicle 6451.0 Diagnosis of Undescended testicle
PC5z111 Maldescent of testis, bilateral Undescended testicle 19026.0 Diagnosis of Undescended testicle
Rows: 16
Code Description Disease ReadcodeDescr Readcode
10965.0 Diagnosis of Undescended testicle Undescended testicle Cryptorchidism PC50.00
12695.0 Diagnosis of Undescended testicle Undescended testicle Maldescent of testicle PC5z.12
19026.0 Diagnosis of Undescended testicle Undescended testicle Maldescent of testis, bilateral PC5z111
28215.0 Diagnosis of Undescended testicle Undescended testicle Undescended testicle NOS PC5z.00
33424.0 Diagnosis of Undescended testicle Undescended testicle Cryptorchidism NOS PC50z00
36325.0 History of Undescended testicle Undescended testicle Teratoma of undescended testis B470300
44918.0 Diagnosis of Undescended testicle Undescended testicle Cryptorchidism, unilateral PC50000
46552.0 Diagnosis of Undescended testicle Undescended testicle Maldescent of testis, unilateral PC5z011
47565.0 Diagnosis of Undescended testicle Undescended testicle Cryptorchidism, bilateral PC50100
5241.0 Diagnosis of Undescended testicle Undescended testicle Ectopic testis PC51.00
634.0 Diagnosis of Undescended testicle Undescended testicle Undescended testicle PC5..00
6451.0 Diagnosis of Undescended testicle Undescended testicle Undescended testis, bilateral PC5z100
64602.0 History of Undescended testicle Undescended testicle Malignant neoplasm of undescended testis B470.00
6794.0 Diagnosis of Undescended testicle Undescended testicle Undescended testis, unilateral PC5z000
7740.0 History of Undescended testicle Undescended testicle Seminoma of undescended testis B470200
96429.0 History of Undescended testicle Undescended testicle Malignant neoplasm of undescended testis NOS B470z00
Rows: 1
Code Description Disease Category
Q53 Undescended testicle Undescended testicle Diagnosis of Undescended testicle

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH328/version/656/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH328/version/656/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH328', '656', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH328/version/656/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH328/version/656/export/codes/?format=json
CSV site_root/phenotypes/PH328/version/656/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH328', '656', api_client=client)

Version History

Version
ID
Name Owner Publish date
656 Undescended testicle ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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