Phenotype Library | phenotype: Undescended testicle

Undescended testicle

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH328

Version ID

656

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Undescended testicle IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Undescended testicle diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of Undescended testicle or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/959

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1628/4395 Undescended testicle - Primary care - Read codes v2

Rows: 16

Code	Description	Disease	Medcode	Category
B470.00	Malignant neoplasm of undescended testis	Undescended testicle	64602.0	History of Undescended testicle
B470200	Seminoma of undescended testis	Undescended testicle	7740.0	History of Undescended testicle
B470300	Teratoma of undescended testis	Undescended testicle	36325.0	History of Undescended testicle
B470z00	Malignant neoplasm of undescended testis NOS	Undescended testicle	96429.0	History of Undescended testicle
PC5..00	Undescended testicle	Undescended testicle	634.0	Diagnosis of Undescended testicle
PC50.00	Cryptorchidism	Undescended testicle	10965.0	Diagnosis of Undescended testicle
PC50000	Cryptorchidism, unilateral	Undescended testicle	44918.0	Diagnosis of Undescended testicle
PC50100	Cryptorchidism, bilateral	Undescended testicle	47565.0	Diagnosis of Undescended testicle
PC50z00	Cryptorchidism NOS	Undescended testicle	33424.0	Diagnosis of Undescended testicle
PC51.00	Ectopic testis	Undescended testicle	5241.0	Diagnosis of Undescended testicle
PC5z.00	Undescended testicle NOS	Undescended testicle	28215.0	Diagnosis of Undescended testicle
PC5z.12	Maldescent of testicle	Undescended testicle	12695.0	Diagnosis of Undescended testicle
PC5z000	Undescended testis, unilateral	Undescended testicle	6794.0	Diagnosis of Undescended testicle
PC5z011	Maldescent of testis, unilateral	Undescended testicle	46552.0	Diagnosis of Undescended testicle
PC5z100	Undescended testis, bilateral	Undescended testicle	6451.0	Diagnosis of Undescended testicle
PC5z111	Maldescent of testis, bilateral	Undescended testicle	19026.0	Diagnosis of Undescended testicle

C1629/4397 Undescended testicle - Primary care - Med codes

Rows: 16

Code	Description	Disease	ReadcodeDescr	Readcode
10965.0	Diagnosis of Undescended testicle	Undescended testicle	Cryptorchidism	PC50.00
12695.0	Diagnosis of Undescended testicle	Undescended testicle	Maldescent of testicle	PC5z.12
19026.0	Diagnosis of Undescended testicle	Undescended testicle	Maldescent of testis, bilateral	PC5z111
28215.0	Diagnosis of Undescended testicle	Undescended testicle	Undescended testicle NOS	PC5z.00
33424.0	Diagnosis of Undescended testicle	Undescended testicle	Cryptorchidism NOS	PC50z00
36325.0	History of Undescended testicle	Undescended testicle	Teratoma of undescended testis	B470300
44918.0	Diagnosis of Undescended testicle	Undescended testicle	Cryptorchidism, unilateral	PC50000
46552.0	Diagnosis of Undescended testicle	Undescended testicle	Maldescent of testis, unilateral	PC5z011
47565.0	Diagnosis of Undescended testicle	Undescended testicle	Cryptorchidism, bilateral	PC50100
5241.0	Diagnosis of Undescended testicle	Undescended testicle	Ectopic testis	PC51.00
634.0	Diagnosis of Undescended testicle	Undescended testicle	Undescended testicle	PC5..00
6451.0	Diagnosis of Undescended testicle	Undescended testicle	Undescended testis, bilateral	PC5z100
64602.0	History of Undescended testicle	Undescended testicle	Malignant neoplasm of undescended testis	B470.00
6794.0	Diagnosis of Undescended testicle	Undescended testicle	Undescended testis, unilateral	PC5z000
7740.0	History of Undescended testicle	Undescended testicle	Seminoma of undescended testis	B470200
96429.0	History of Undescended testicle	Undescended testicle	Malignant neoplasm of undescended testis NOS	B470z00

C1630/4399 Undescended testicle - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
Q53	Undescended testicle	Undescended testicle	Diagnosis of Undescended testicle

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH328/version/656/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH328/version/656/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH328', '656', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH328/version/656/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH328/version/656/export/codes/?format=json
CSV	site_root/phenotypes/PH328/version/656/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH328', '656', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
656	Undescended testicle	ieuan.scanlon	2021-10-06	currently shown