Phenotype Library | phenotype: Secondary polycythaemia

Secondary polycythaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH33

Version ID

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Secondary polycythaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Secondary polycythaemia' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Secondary polycythaemia' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/116

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C780/2699 Secondary polycythaemia - Primary care - Read codes v2

Rows: 8

Code	Description	Disease	Medcode	Category
D410.00	Secondary polycythaemia	Secondary polycythaemia	5086.0	Diagnosis of Secondary polycythaemia
D410000	Stress polycythaemia	Secondary polycythaemia	15311.0	Diagnosis of Secondary polycythaemia
D410011	Spurious polycythaemia	Secondary polycythaemia	17486.0	Diagnosis of Secondary polycythaemia
D410100	High altitude polycythaemia	Secondary polycythaemia	37129.0	Diagnosis of Secondary polycythaemia
D410200	Polycythaemia due to cyanotic heart disease	Secondary polycythaemia	17605.0	Diagnosis of Secondary polycythaemia
D410300	Polycythaemia due to cyanotic respiratory disease	Secondary polycythaemia	44611.0	Diagnosis of Secondary polycythaemia
D410400	Renal polycythaemia	Secondary polycythaemia	44894.0	Diagnosis of Secondary polycythaemia
D410z00	Secondary polycythaemia NOS	Secondary polycythaemia	15301.0	Diagnosis of Secondary polycythaemia

C781/2701 Secondary polycythaemia - Primary care - Med codes

Rows: 8

Code	Description	Disease	ReadcodeDescr	Readcode
15301.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Secondary polycythaemia NOS	D410z00
15311.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Stress polycythaemia	D410000
17486.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Spurious polycythaemia	D410011
17605.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Polycythaemia due to cyanotic heart disease	D410200
37129.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	High altitude polycythaemia	D410100
44611.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Polycythaemia due to cyanotic respiratory disease	D410300
44894.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Renal polycythaemia	D410400
5086.0	Diagnosis of Secondary polycythaemia	Secondary polycythaemia	Secondary polycythaemia	D410.00

C782/2703 Secondary polycythaemia - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
D75.1	Secondary polycythaemia	Secondary polycythaemia	Diagnosis of Secondary polycythaemia

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH33/version/66/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH33/version/66/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH33', '66', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH33/version/66/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH33/version/66/export/codes/?format=json
CSV	site_root/phenotypes/PH33/version/66/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH33', '66', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
66	Secondary polycythaemia	ieuan.scanlon	2021-10-06	currently shown