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Secondary polycythaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH33
Version ID
66
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Secondary polycythaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Secondary polycythaemia' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Secondary polycythaemia' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 8
Code Description Disease Medcode Category
D410.00 Secondary polycythaemia Secondary polycythaemia 5086.0 Diagnosis of Secondary polycythaemia
D410000 Stress polycythaemia Secondary polycythaemia 15311.0 Diagnosis of Secondary polycythaemia
D410011 Spurious polycythaemia Secondary polycythaemia 17486.0 Diagnosis of Secondary polycythaemia
D410100 High altitude polycythaemia Secondary polycythaemia 37129.0 Diagnosis of Secondary polycythaemia
D410200 Polycythaemia due to cyanotic heart disease Secondary polycythaemia 17605.0 Diagnosis of Secondary polycythaemia
D410300 Polycythaemia due to cyanotic respiratory disease Secondary polycythaemia 44611.0 Diagnosis of Secondary polycythaemia
D410400 Renal polycythaemia Secondary polycythaemia 44894.0 Diagnosis of Secondary polycythaemia
D410z00 Secondary polycythaemia NOS Secondary polycythaemia 15301.0 Diagnosis of Secondary polycythaemia
Rows: 8
Code Description Disease ReadcodeDescr Readcode
15301.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Secondary polycythaemia NOS D410z00
15311.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Stress polycythaemia D410000
17486.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Spurious polycythaemia D410011
17605.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Polycythaemia due to cyanotic heart disease D410200
37129.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia High altitude polycythaemia D410100
44611.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Polycythaemia due to cyanotic respiratory disease D410300
44894.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Renal polycythaemia D410400
5086.0 Diagnosis of Secondary polycythaemia Secondary polycythaemia Secondary polycythaemia D410.00
Rows: 1
Code Description Disease Category
D75.1 Secondary polycythaemia Secondary polycythaemia Diagnosis of Secondary polycythaemia

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH33/version/66/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH33/version/66/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH33', '66', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH33/version/66/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH33/version/66/export/codes/?format=json
CSV site_root/phenotypes/PH33/version/66/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH33', '66', api_client=client)

Version History

Version
ID
Name Owner Publish date
66 Secondary polycythaemia ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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