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Urinary Tract Infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH333
Version ID
666
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Urinary Tract Infections's IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of 'Urinary Tract Infections's or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Category
N08.0 Glomerular disorders in infectious and parasitic diseases classified elsewhere Urinary Tract Infections Diagnosis of Urinary Tract Infections
N10 Acute tubulo-interstitial nephritis Urinary Tract Infections Diagnosis of Urinary Tract Infections
N13.6 Pyonephrosis Urinary Tract Infections Diagnosis of Urinary Tract Infections
N15.1 Renal and perinephric abscess Urinary Tract Infections Diagnosis of Urinary Tract Infections
N16.0 Renal tubulo-interstitial disorders in infectious and parasitic diseases classified elsewhere Urinary Tract Infections Diagnosis of Urinary Tract Infections
N29.0 Late syphilis of kidney Urinary Tract Infections Diagnosis of Urinary Tract Infections
N29.1 Other disorders of kidney and ureter in infectious and parasitic diseases classified elsewhere Urinary Tract Infections Diagnosis of Urinary Tract Infections
N30.0 Acute cystitis Urinary Tract Infections Diagnosis of Urinary Tract Infections
N30.9 Cystitis, unspecified Urinary Tract Infections Diagnosis of Urinary Tract Infections
N33.0 Tuberculous cystitis Urinary Tract Infections Diagnosis of Urinary Tract Infections
N34 Urethritis and urethral syndrome Urinary Tract Infections Diagnosis of Urinary Tract Infections
N37.0 Urethritis in diseases classified elsewhere Urinary Tract Infections Diagnosis of Urinary Tract Infections
N39.0 Urinary tract infection, site not specified Urinary Tract Infections Diagnosis of Urinary Tract Infections

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH333/version/666/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH333/version/666/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH333', '666', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH333/version/666/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH333/version/666/export/codes/?format=json
CSV site_root/phenotypes/PH333/version/666/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH333', '666', api_client=client)

Version History

Version
ID
Name Owner Publish date
666 Urinary Tract Infections ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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