Phenotypes > Oesophageal varices

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Oesophageal varices

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH334
Version ID
668
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes OPCS4 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Oesophageal varices' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Oesophageal varices' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Oesophageal varices' or history of diagnosis during a hospitalization OR Secondary care (OPCS4)

  2. ALL procedures for 'Oesophageal varices' during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/976

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 22
Code Description Disease Medcode Category
7609.00 Open operations on oesophageal varices Oesophageal varices 24220.0 Procedure for Oesophageal varices
7609300.0 Local ligation of oesophageal varices Oesophageal varices 43404.0 Procedure for Oesophageal varices
7609400.0 Open injection sclerotherapy to oesophageal varices Oesophageal varices 20912.0 Procedure for Oesophageal varices
7609y00 Other specified open operation on oesophageal varices Oesophageal varices 107975.0 Procedure for Oesophageal varices
7609y11 Tanner devascularisation for bleeding varices Oesophageal varices 62038.0 Procedure for Oesophageal varices
7609z00 Open operation on oesophageal varices NOS Oesophageal varices 20233.0 Procedure for Oesophageal varices
760C300 Fibreoptic endoscopic injection sclerotherapy oesoph varices Oesophageal varices 11960.0 Procedure for Oesophageal varices
760C500 Fibreoptic endoscopic banding of oesophageal varices Oesophageal varices 16759.0 Procedure for Oesophageal varices
760F300 Rigid oesophagoscopic injection sclerotherapy oesoph varices Oesophageal varices 47214.0 Procedure for Oesophageal varices
760F400 Rigid oesophagoscopic banding of oesophageal varices Oesophageal varices 46647.0 Procedure for Oesophageal varices
761D800 Fibreopt endoscop rubber band ligation of upper GIT varices Oesophageal varices 89717.0 Procedure for Oesophageal varices
G85..11 Oesophageal varices Oesophageal varices 1641.0 Diagnosis of Oesophageal varices
G850.00 Oesophageal varices with bleeding Oesophageal varices 24989.0 Diagnosis of Oesophageal varices
G851.00 Oesophageal varices without bleeding Oesophageal varices 30655.0 Diagnosis of Oesophageal varices
G852.00 Oesophageal varices in diseases EC Oesophageal varices 44424.0 Diagnosis of Oesophageal varices
G852000 Oesophageal varices with bleeding in diseases EC Oesophageal varices 96756.0 Diagnosis of Oesophageal varices
G852100 Oesophageal varices without bleeding in diseases EC Oesophageal varices 73139.0 Diagnosis of Oesophageal varices
G852200 Oesophageal varices in cirrhosis of the liver Oesophageal varices 26319.0 Diagnosis of Oesophageal varices
G852300 Oesophageal varices in alcoholic cirrhosis of the liver Oesophageal varices 8363.0 Diagnosis of Oesophageal varices
G852z00 Oesophageal varices in diseases EC NOS Oesophageal varices 62582.0 Diagnosis of Oesophageal varices
G858.00 Oesophageal varices NOS Oesophageal varices 10797.0 Diagnosis of Oesophageal varices
Gyu9400 [X]Oesophageal varices in diseases classified elsewhere Oesophageal varices 105611.0 Diagnosis of Oesophageal varices
Rows: 22
Code Description Disease ReadcodeDescr Readcode
105611.0 Diagnosis of Oesophageal varices Oesophageal varices [X]Oesophageal varices in diseases classified elsewhere Gyu9400
10797.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices NOS G858.00
107975.0 Procedure for Oesophageal varices Oesophageal varices Other specified open operation on oesophageal varices 7609y00
11960.0 Procedure for Oesophageal varices Oesophageal varices Fibreoptic endoscopic injection sclerotherapy oesoph varices 760C300
1641.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices G85..11
16759.0 Procedure for Oesophageal varices Oesophageal varices Fibreoptic endoscopic banding of oesophageal varices 760C500
20233.0 Procedure for Oesophageal varices Oesophageal varices Open operation on oesophageal varices NOS 7609z00
20912.0 Procedure for Oesophageal varices Oesophageal varices Open injection sclerotherapy to oesophageal varices 7609400.0
24220.0 Procedure for Oesophageal varices Oesophageal varices Open operations on oesophageal varices 7609.00
24989.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices with bleeding G850.00
26319.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices in cirrhosis of the liver G852200
30655.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices without bleeding G851.00
43404.0 Procedure for Oesophageal varices Oesophageal varices Local ligation of oesophageal varices 7609300.0
44424.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices in diseases EC G852.00
46647.0 Procedure for Oesophageal varices Oesophageal varices Rigid oesophagoscopic banding of oesophageal varices 760F400
47214.0 Procedure for Oesophageal varices Oesophageal varices Rigid oesophagoscopic injection sclerotherapy oesoph varices 760F300
62038.0 Procedure for Oesophageal varices Oesophageal varices Tanner devascularisation for bleeding varices 7609y11
62582.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices in diseases EC NOS G852z00
73139.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices without bleeding in diseases EC G852100
8363.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices in alcoholic cirrhosis of the liver G852300
89717.0 Procedure for Oesophageal varices Oesophageal varices Fibreopt endoscop rubber band ligation of upper GIT varices 761D800
96756.0 Diagnosis of Oesophageal varices Oesophageal varices Oesophageal varices with bleeding in diseases EC G852000
Rows: 3
Code Description Disease Category
I85 Oesophageal varices Oesophageal varices Diagnosis of Oesophageal varices
I98.2 Oesophageal varices without bleeding in diseases classified elsewhere Oesophageal varices Diagnosis of Oesophageal varices
I98.3 Oesophageal varices with bleeding in diseases classified elsewhere Oesophageal varices Diagnosis of Oesophageal varices
Rows: 10
Code Description Disease Category
G10 Open operations on varices of oesophagus Oesophageal varices Procedure for Oesophageal varices
G10.1 Disconnection of azygos vein Oesophageal varices Procedure for Oesophageal varices
G10.2 Transection of oesophagus using staple gun Oesophageal varices Procedure for Oesophageal varices
G10.3 Transection of oesophagus NEC Oesophageal varices Procedure for Oesophageal varices
G10.4 Local ligation of varices of oesophagus Oesophageal varices Procedure for Oesophageal varices
G10.5 Open injection sclerotherapy to varices of oesophagus Oesophageal varices Procedure for Oesophageal varices
G10.8 Other specified open operations on varices of oesophagus Oesophageal varices Procedure for Oesophageal varices
G10.9 Unspecified open operations on varices of oesophagus Oesophageal varices Procedure for Oesophageal varices
G17.4 Endoscopic injection sclerotherapy to varices of oesophagus using rigid oesophagoscope Oesophageal varices Procedure for Oesophageal varices
G43.7 Fibreoptic endoscopic rubber band ligation of upper gastrointestinal tract varices Oesophageal varices Procedure for Oesophageal varices

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH334/version/668/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH334/version/668/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH334', '668', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH334/version/668/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH334/version/668/export/codes/?format=json
CSV site_root/phenotypes/PH334/version/668/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH334', '668', api_client=client)

Version History

Version
ID		 Name Owner Publish date
668 Oesophageal varices ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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