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Viral diseases (excl chronic hepatitis/HIV)

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH335
Version ID
670
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Viral diseases (excl chronic hepatitis/HIV) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Viral diseases (excl chronic hepatitis/HIV) or history of diagnosis during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 78
Code Description Disease Category
A08.0 Rotaviral enteritis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A08.1 Acute gastroenteropathy due to Norwalk agent Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A08.2 Adenoviral enteritis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A08.3 Other viral enteritis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A08.4 Viral intestinal infection, unspecified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A60 Anogenital herpesviral [herpes simplex] infection Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A63.0 Anogenital (venereal) warts Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A80 Acute poliomyelitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A81.1 Subacute sclerosing panencephalitis Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
A81.2 Progressive multifocal leukoencephalopathy Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A82 Rabies Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A83 Mosquito-borne viral encephalitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A84 Tick-borne viral encephalitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A85 Other viral encephalitis, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A86 Unspecified viral encephalitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A87 Viral meningitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A88 Other viral infections of central nervous system, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A89 Unspecified viral infection of central nervous system Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A90 Dengue fever [classical dengue] Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A91 Dengue haemorrhagic fever Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A92 Other mosquito-borne viral fevers Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A93 Other arthropod-borne viral fevers, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A94 Unspecified arthropod-borne viral fever Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A95 Yellow fever Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A96 Arenaviral haemorrhagic fever Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A98 Other viral haemorrhagic fevers, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
A99 Unspecified viral haemorrhagic fever Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B00 Herpesviral [herpes simplex] infections Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B01 Varicella [chickenpox] Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B02 Zoster [herpes zoster] Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
B05 Measles Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B06 Rubella [German measles] Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B07 Viral warts Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B08 Other viral infections characterized by skin and mucous membrane lesions, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B09 Unspecified viral infection characterized by skin and mucous membrane lesions Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B15 Acute hepatitis A Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B16 Acute hepatitis B Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B17 Other acute viral hepatitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B19 Unspecified viral hepatitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B20.2 HIV disease resulting in cytomegaloviral disease Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B20.3 HIV disease resulting in other viral infections Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B25 Cytomegaloviral disease Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B26 Mumps Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B27 Infectious mononucleosis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B30 Viral conjunctivitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B33 Other viral diseases, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B34 Viral infection of unspecified site Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
B91 Sequelae of poliomyelitis Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
B94.1 Sequelae of viral encephalitis Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
B94.2 Sequelae of viral hepatitis Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
B97 Viral agents as the cause of diseases classified to other chapters Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
G02.0 Meningitis in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
G04.1 Tropical spastic paraplegia Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
G05.1 Encephalitis, myelitis and encephalomyelitis in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
G53.0 Postzoster neuralgia Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
H19.1 Herpesviral keratitis and keratoconjunctivitis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
H62.1 Otitis externa in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
H67.1 Otitis media in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
I41.1 Myocarditis in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J09 Influenza due to identified avian influenza virus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J10 Influenza due to other identified influenza virus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J11 Influenza, virus not identified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J12 Viral pneumonia, not elsewhere classified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J17.1 Pneumonia in viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J20.3 Acute bronchitis due to coxsackievirus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J20.4 Acute bronchitis due to parainfluenza virus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J20.5 Acute bronchitis due to respiratory syncytial virus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J20.6 Acute bronchitis due to rhinovirus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J20.7 Acute bronchitis due to echovirus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J21.0 Acute bronchiolitis due to respiratory syncytial virus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J21.1 Acute bronchiolitis due to human metapneumovirus Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J21.8 Acute bronchiolitis due to other specified organisms Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
J21.9 Acute bronchiolitis, unspecified Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
M01.4 Rubella arthritis Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
M01.5 Arthritis in other viral diseases classified elsewhere Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
M89.6 Osteopathy after poliomyelitis Viral diseases (excl chronic hepatitis/HIV) History of Viral diseases (excl chronic hepatitis/HIV)
P23.0 Congenital pneumonia due to viral agent Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)
P35 Congenital viral diseases Viral diseases (excl chronic hepatitis/HIV) Diagnosis of Viral diseases (excl chronic hepatitis/HIV)

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH335/version/670/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH335/version/670/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH335', '670', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH335/version/670/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH335/version/670/export/codes/?format=json
CSV site_root/phenotypes/PH335/version/670/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH335', '670', api_client=client)

Version History

Version
ID
Name Owner Publish date
670 Viral diseases (excl chronic hepatitis/HIV) ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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