Respiratory Virus (Unspecified) Identification (Primary Care)

PH3691 / 8803

OpenSAFELY

Jan 26, 2026

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OpenCodelists Phenotype

  1. Overview

    Codelist ID
    opensafely/respiratory-virus-unspecified-identification-primary-care
    Version ID
    3392cb94
    Coding System
    SNOMED CT codes
    Collections
    OpenCodelistPhenotype Library
    Tags
    No data

  2. Definition

    This codelist was taken from OpenCodelists, created by OpenSAFELY. We recommend viewing this Phenotype on the OpenCodelist website to view the most recent version.

    Codelist for identifying repsiratory infections in primary care which have no identified pathogen. For additional case identification, the SNOMED codes for LRTI (50417007) or UTRI (54150009) can be used to identify cases in emergency care (ECDS). For additional case identification in older adults, the SNOMED codes for COPD diagnosis code (195951007) can be used to identify cases in emergency care (ECDS).

    © University of Oxford for the Bennett Institute for Applied Data Science 2025. This work may be copied freely for non-commercial research and study.

  3. Methodology

    Codelist checked by Jennifer Quint. To see full outcome phenotypes see Github issue in references

  4. References

    Source Reference

    https://www.opencodelists.org/codelist/opensafely/respiratory-virus-unspecified-identification-primary-care/3392cb94

    References

  5. Clinical Codelist

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH3691/version/8803/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH3691',
     version_id=8803
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH3691',
     version_id=8803
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH3691/version/8803/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH3691',
     version_id=8803
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH3691',
     version_id=8803
    )

  7. Version History

    Version IDNameOwnerPublish date
    Respiratory Virus (Unspecified) Identification (Primary Care) ieuan.scanlon2026-01-26 23:29
    8802 Respiratory Virus (Unspecified) Identification (Primary Care) ieuan.scanlon2026-01-26 23:29