Phenotype Library | phenotype: Acute Kidney Injury

Acute Kidney Injury

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH37

Version ID

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Acute Kidney Injury' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of 'Acute Kidney Injury' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/129

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C792/2723 Acute Kidney Injury - Secondary care - Diagnoses - ICD10 codes

Rows: 5

Code	Description	Disease	Category
N17.0	Acute renal failure with tubular necrosis	Acute Kidney Injury	Diagnosis of Acute Kidney Injury
N17.1	Acute renal failure with acute cortical necrosis	Acute Kidney Injury	Diagnosis of Acute Kidney Injury
N17.2	Acute renal failure with medullary necrosis	Acute Kidney Injury	Diagnosis of Acute Kidney Injury
N17.8	Other acute renal failure	Acute Kidney Injury	Diagnosis of Acute Kidney Injury
N17.9	Acute renal failure, unspecified	Acute Kidney Injury	Diagnosis of Acute Kidney Injury

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH37/version/74/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH37/version/74/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH37', '74', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH37/version/74/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH37/version/74/export/codes/?format=json
CSV	site_root/phenotypes/PH37/version/74/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH37', '74', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
74	Acute Kidney Injury	ieuan.scanlon	2021-10-06	currently shown