vitamin-d-deficiency-symptoms

PH3802 / 8955

OpenSAFELY

Jan 26, 2026

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OpenCodelists Phenotype

  1. Overview

    Codelist ID
    opensafely/vitamin-d-deficiency-symptoms
    Version ID
    1a07ecb8
    Coding System
    SNOMED CT codes
    Collections
    OpenCodelistPhenotype Library
    Tags
    No data

  2. Definition

    This codelist was taken from OpenCodelists, created by OpenSAFELY. We recommend viewing this Phenotype on the OpenCodelist website to view the most recent version.

    Captures vitamin D deficiency symptoms. It is developed for the purpose of the vitamin D study (indications for vitamin D testing/ prescribing).

    © University of Oxford for the Bennett Institute for Applied Data Science 2025. This work may be copied freely for non-commercial research and study.

  3. Methodology

    Symptoms to be captured: - bone pain (not due to any other pathology), - muscle weakness (where differentiation given - proximal), - proximal myopathy.

    Search term 1: bone. Codes from categories: situation, observable entity, finding and event reviewed and selected.

    Search term 2: muscle weakness. All categories reviewed. Terms referring to non-related specific disorders, fatigueable weakness (specific to myasthenia gravis) and distal weakness are excluded.

    Search term 3: proximal myopathy. All categories reviewed, relevant selected.

  4. References

    Source Reference

    https://www.opencodelists.org/codelist/opensafely/vitamin-d-deficiency-symptoms/1a07ecb8

    References

  5. Clinical Codelist

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH3802/version/8955/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH3802',
     version_id=8955
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH3802',
     version_id=8955
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH3802/version/8955/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH3802',
     version_id=8955
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH3802',
     version_id=8955
    )

  7. Version History

    Version IDNameOwnerPublish date
    vitamin-d-deficiency-symptoms ieuan.scanlon2026-01-26 23:35