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Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves

Type
Disease or Syndrome
ID
PH414
Version ID
828
Data Sources
Valid event data range
01/01/2000 - 31/12/2007
Sex
Female, Male
Agreement Date
2011-06-28
Coding system
Read codes v2 OXMIS codes
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Patient level data were extracted from the General Practice Research Database (GPRD), which contains anonymised, patient based data on morbidity, prescribing, treatment, and referral collected from over 500 general practices, covering about 7% of the UK population (4.4 million patients).14 Data are in Read code format—a hierarchical system used to code clinical data. Additional data on prescriptions and test results are available as free-text entries. We selected a sample of 148 practices that provided data to the GPRD continuously between January 2000 and December 2007, structured to include a range of list (patient panel) sizes. Selected practices were nationally representative in terms of patient sex and age distribution and area socioeconomic deprivation but had a relatively large average list size, reflecting a bias towards larger practices in the GPRD. Overall, the selected practices performed marginally better than national practices on the clinical indicators in the Quality and Outcomes Framework. A random selection of 4500 patients registered for at least one day between 1 January 2000 and 31 December 2007 was drawn from each practice. For practices with fewer than 4501 patients, all patients were selected. The final sample consisted of 653 500 patients. Patients with relevant conditions were identified from their diagnostic Read codes. Patients for whom targets were met were identified from the relevant Read codes and free-text terms.

Publications

  • Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves, Effect of financial incentives on incentivised and non-incentivised clinical activities: longitudinal analysis of data from the UK Quality and Outcomes Framework. BMJ, 342:d3590, 2011.

Clinical Code List

Rows: 231
Code Description Entity type Coding System (OXMIS Read) Category
1656.00 Feverish cold cold Read diagnostic
171..00 Cough cold Read diagnostic
171..11 C/O - cough cold Read diagnostic
1712.00 Dry cough cold Read diagnostic
1713.00 Productive cough -clear sputum cold Read diagnostic
1714.00 Productive cough -green sputum cold Read diagnostic
1715.00 Productive cough-yellow sputum cold Read diagnostic
1716.00 Productive cough NOS cold Read diagnostic
1716.11 Coughing up phlegm cold Read diagnostic
1717.00 Night cough present cold Read diagnostic
1719.00 Chesty cough cold Read diagnostic
1719.11 Bronchial cough cold Read diagnostic
171A.00 Chronic cough cold Read diagnostic
171B.00 Persistent cough cold Read diagnostic
171C.00 Morning cough cold Read diagnostic
171D.00 Evening cough cold Read diagnostic
171E.00 Unexplained cough cold Read diagnostic
171F.00 Cough with fever cold Read diagnostic
171G.00 Bovine cough cold Read diagnostic
171H.00 Difficulty in coughing up sputum cold Read diagnostic
171J.00 Reflux cough cold Read diagnostic
171Z.00 Cough symptom NOS cold Read diagnostic
173B.00 Nocturnal cough / wheeze cold Read diagnostic
1C9..00 Sore throat symptom cold Read diagnostic
1C92.00 Has a sore throat cold Read diagnostic
1C93.00 Persistent sore throat cold Read diagnostic
1C9Z.00 Sore throat symptom NOS cold Read diagnostic
2DB6.00 O/E - follicular tonsillitis cold Read diagnostic
A34..00 Streptococcal sore throat and scarlatina cold Read diagnostic
A340.00 Streptococcal sore throat cold Read diagnostic
A340000 Streptococcal angina cold Read diagnostic
A340100 Streptococcal laryngitis cold Read diagnostic
A340200 Streptococcal pharyngitis cold Read diagnostic
A340300 Streptococcal tonsillitis cold Read diagnostic
A340z00 Streptococcal sore throat NOS cold Read diagnostic
A341.00 Scarlet fever - scarlatina cold Read diagnostic
A341.11 Scarlet fever cold Read diagnostic
A341.12 Scarlatina cold Read diagnostic
A34z.00 Streptococcal sore throat with scarlatina NOS cold Read diagnostic
A383000 Fusobacterial necrotising tonsillitis cold Read diagnostic
A552.00 Postmeasles otitis media cold Read diagnostic
A793.00 Rhinovirus cold Read diagnostic
AA1z.12 Vincent's tonsillitis cold Read diagnostic
F51..00 Nonsuppurative otitis media + eustachian tube disorders cold Read diagnostic
F510.00 Acute non suppurative otitis media cold Read diagnostic
F510000 Acute otitis media with effusion cold Read diagnostic
F510011 Acute secretory otitis media cold Read diagnostic
F510100 Acute serous otitis media cold Read diagnostic
F510200 Acute mucoid otitis media cold Read diagnostic
F510300 Acute sanguinous otitis media cold Read diagnostic
F510400 Acute allergic serous otitis media cold Read diagnostic
F510500 Acute allergic mucoid otitis media cold Read diagnostic
F510600 Acute allergic sanguinous otitis media cold Read diagnostic
F510z00 Acute nonsuppurative otitis media NOS cold Read diagnostic
F511.00 Chronic otitis media with effusion; serous cold Read diagnostic
F511.11 Chronic secretory otitis media; serous cold Read diagnostic
F511100 Serosanguinous chronic otitis media cold Read diagnostic
F511z00 Chronic serous otitis media NOS cold Read diagnostic
F512.00 Chronic otitis media with effusion; mucoid cold Read diagnostic
F512.12 Chronic secretory otitis media; mucoid cold Read diagnostic
F512100 Mucosanguinous chronic otitis media cold Read diagnostic
F512z00 Chronic mucoid otitis media NOS cold Read diagnostic
F513.00 Chronic otitis media with effusion; other cold Read diagnostic
F513000 Chronic allergic otitis media cold Read diagnostic
F513100 Chronic otitis media with effusion; purulent cold Read diagnostic
F513111 Chronic secretory otitis media; purulent cold Read diagnostic
F513z00 Other chronic nonsuppurative otitis media NOS cold Read diagnostic
F514.00 Unspecified nonsuppurative otitis media cold Read diagnostic
F514000 Allergic otitis media NOS cold Read diagnostic
F514100 Serous otitis media NOS cold Read diagnostic
F514200 Catarrhal otitis media NOS cold Read diagnostic
F514300 Mucoid otitis media NOS cold Read diagnostic
F514z00 Nonsuppurative otitis media NOS cold Read diagnostic
F518.00 Chronic otitis media with effusion; unspecified cold Read diagnostic
F52..00 Suppurative and unspecified otitis media cold Read diagnostic
F520.00 Acute suppurative otitis media cold Read diagnostic
F520000 Acute suppurative otitis media tympanic membrane intact cold Read diagnostic
F520100 Acute suppurative otitis media tympanic membrane ruptured cold Read diagnostic
F520300 Acute suppurative otitis media due to disease EC cold Read diagnostic
F520z00 Acute suppurative otitis media NOS cold Read diagnostic
F521.00 Chronic suppurative otitis media; tubotympanic cold Read diagnostic
F522.00 Chronic suppurative otitis media; atticoantral cold Read diagnostic
F523.00 Chronic suppurative otitis media NOS cold Read diagnostic
F524.00 Purulent otitis media NOS cold Read diagnostic
F524000 Bilateral suppurative otitis media cold Read diagnostic
F525.00 Recurrent acute otitis media cold Read diagnostic
F526.00 Acute left otitis media cold Read diagnostic
F527.00 Acute right otitis media cold Read diagnostic
F528.00 Acute bilateral otitis media cold Read diagnostic
F52z.00 Otitis media NOS cold Read diagnostic
FyuP000 [X]Other acute nonsuppurative otitis media cold Read diagnostic
FyuP100 [X]Other chronic nonsuppurative otitis media cold Read diagnostic
FyuP200 [X]Other chronic suppurative otitis media cold Read diagnostic
FyuP300 [X]Otitis media in bacterial diseases classified elsewhere cold Read diagnostic
FyuP400 [X]Otitis media in viral diseases classified elsewhere cold Read diagnostic
FyuP500 [X]Otitis media in other diseases classified elsewhere cold Read diagnostic
H00..00 Acute nasopharyngitis cold Read diagnostic
H00..11 Common cold cold Read diagnostic
H00..12 Coryza - acute cold Read diagnostic
H00..13 Febrile cold cold Read diagnostic
H00..14 Nasal catarrh - acute cold Read diagnostic
H00..15 Pyrexial cold cold Read diagnostic
H00..16 Rhinitis - acute cold Read diagnostic
H01..00 Acute sinusitis cold Read diagnostic
H01..11 Sinusitis cold Read diagnostic
H010.00 Acute maxillary sinusitis cold Read diagnostic
H010.11 Antritis - acute cold Read diagnostic
H011.00 Acute frontal sinusitis cold Read diagnostic
H012.00 Acute ethmoidal sinusitis cold Read diagnostic
H013.00 Acute sphenoidal sinusitis cold Read diagnostic
H01y.00 Other acute sinusitis cold Read diagnostic
H01y000 Acute pansinusitis cold Read diagnostic
H01yz00 Other acute sinusitis NOS cold Read diagnostic
H01z.00 Acute sinusitis NOS cold Read diagnostic
H02..00 Acute pharyngitis cold Read diagnostic
H02..11 Sore throat NOS cold Read diagnostic
H02..12 Viral sore throat NOS cold Read diagnostic
H02..13 Throat infection - pharyngitis cold Read diagnostic
H020.00 Acute gangrenous pharyngitis cold Read diagnostic
H021.00 Acute phlegmonous pharyngitis cold Read diagnostic
H022.00 Acute ulcerative pharyngitis cold Read diagnostic
H023.00 Acute bacterial pharyngitis cold Read diagnostic
H023000 Acute pneumococcal pharyngitis cold Read diagnostic
H023100 Acute staphylococcal pharyngitis cold Read diagnostic
H023z00 Acute bacterial pharyngitis NOS cold Read diagnostic
H024.00 Acute viral pharyngitis cold Read diagnostic
H025.00 Allergic pharyngitis cold Read diagnostic
H02z.00 Acute pharyngitis NOS cold Read diagnostic
H03..00 Acute tonsillitis cold Read diagnostic
H03..11 Throat infection - tonsillitis cold Read diagnostic
H03..12 Tonsillitis cold Read diagnostic
H030.00 Acute erythematous tonsillitis cold Read diagnostic
H031.00 Acute follicular tonsillitis cold Read diagnostic
H032.00 Acute ulcerative tonsillitis cold Read diagnostic
H033.00 Acute catarrhal tonsillitis cold Read diagnostic
H034.00 Acute gangrenous tonsillitis cold Read diagnostic
H035.00 Acute bacterial tonsillitis cold Read diagnostic
H035000 Acute pneumococcal tonsillitis cold Read diagnostic
H035100 Acute staphylococcal tonsillitis cold Read diagnostic
H035z00 Acute bacterial tonsillitis NOS cold Read diagnostic
H036.00 Acute viral tonsillitis cold Read diagnostic
H037.00 Recurrent acute tonsillitis cold Read diagnostic
H03z.00 Acute tonsillitis NOS cold Read diagnostic
H04..00 Acute laryngitis and tracheitis cold Read diagnostic
H040.00 Acute laryngitis cold Read diagnostic
H040000 Acute oedematous laryngitis cold Read diagnostic
H040100 Acute ulcerative laryngitis cold Read diagnostic
H040200 Acute catarrhal laryngitis cold Read diagnostic
H040300 Acute phlegmonous laryngitis cold Read diagnostic
H040400 Acute haemophilus influenzae laryngitis cold Read diagnostic
H040500 Acute pneumococcal laryngitis cold Read diagnostic
H040600 Acute suppurative laryngitis cold Read diagnostic
H040w00 Acute viral laryngitis unspecified cold Read diagnostic
H040x00 Acute bacterial laryngitis unspecified cold Read diagnostic
H040z00 Acute laryngitis NOS cold Read diagnostic
H041.00 Acute tracheitis cold Read diagnostic
H041000 Acute tracheitis without obstruction cold Read diagnostic
H041100 Acute tracheitis with obstruction cold Read diagnostic
H041z00 Acute tracheitis NOS cold Read diagnostic
H042.00 Acute laryngotracheitis cold Read diagnostic
H042.11 Laryngotracheitis cold Read diagnostic
H042000 Acute laryngotracheitis without obstruction cold Read diagnostic
H042100 Acute laryngotracheitis with obstruction cold Read diagnostic
H042z00 Acute laryngotracheitis NOS cold Read diagnostic
H043.00 Acute epiglottitis (non strep) cold Read diagnostic
H043.11 Viral epiglottitis cold Read diagnostic
H043000 Acute epiglottitis without obstruction cold Read diagnostic
H043100 Acute epiglottitis with obstruction cold Read diagnostic
H043200 Acute obstructive laryngitis cold Read diagnostic
H043211 Croup cold Read diagnostic
H043z00 Acute epiglottitis NOS cold Read diagnostic
H044.00 Croup cold Read diagnostic
H04z.00 Acute laryngitis and tracheitis NOS cold Read diagnostic
H05..00 Other acute upper respiratory infections cold Read diagnostic
H050.00 Acute laryngopharyngitis cold Read diagnostic
H051.00 Acute upper respiratory tract infection cold Read diagnostic
H052.00 Pharyngotracheitis cold Read diagnostic
H053.00 Tracheopharyngitis cold Read diagnostic
H054.00 Recurrent upper respiratory tract infection cold Read diagnostic
H055.00 Pharyngolaryngitis cold Read diagnostic
H05y.00 Other upper respiratory infections of multiple sites cold Read diagnostic
H05z.00 Upper respiratory infection NOS cold Read diagnostic
H05z.11 Upper respiratory tract infection NOS cold Read diagnostic
H05z.12 Viral upper respiratory tract infection NOS cold Read diagnostic
H06..00 Acute bronchitis and bronchiolitis cold Read diagnostic
H060.00 Acute bronchitis cold Read diagnostic
H060.11 Acute wheezy bronchitis cold Read diagnostic
H060000 Acute fibrinous bronchitis cold Read diagnostic
H060100 Acute membranous bronchitis cold Read diagnostic
H060200 Acute pseudomembranous bronchitis cold Read diagnostic
H060300 Acute purulent bronchitis cold Read diagnostic
H060400 Acute croupous bronchitis cold Read diagnostic
H060500 Acute tracheobronchitis cold Read diagnostic
H060600 Acute pneumococcal bronchitis cold Read diagnostic
H060700 Acute streptococcal bronchitis cold Read diagnostic
H060800 Acute haemophilus influenzae bronchitis cold Read diagnostic
H060900 Acute neisseria catarrhalis bronchitis cold Read diagnostic
H060A00 Acute bronchitis due to mycoplasma pneumoniae cold Read diagnostic
H060B00 Acute bronchitis due to coxsackievirus cold Read diagnostic
H060C00 Acute bronchitis due to parainfluenza virus cold Read diagnostic
H060D00 Acute bronchitis due to respiratory syncytial virus cold Read diagnostic
H060E00 Acute bronchitis due to rhinovirus cold Read diagnostic
H060F00 Acute bronchitis due to echovirus cold Read diagnostic
H060v00 Subacute bronchitis unspecified cold Read diagnostic
H060w00 Acute viral bronchitis unspecified cold Read diagnostic
H060x00 Acute bacterial bronchitis unspecified cold Read diagnostic
H060z00 Acute bronchitis NOS cold Read diagnostic
H06z.00 Acute bronchitis or bronchiolitis NOS cold Read diagnostic
H07..00 Chest cold cold Read diagnostic
H140.00 Chronic tonsillitis cold Read diagnostic
H143.00 Chronic adenotonsillitis cold Read diagnostic
H14y500 Caseous tonsillitis cold Read diagnostic
H14y600 Lingular tonsillitis cold Read diagnostic
H300.00 Tracheobronchitis NOS cold Read diagnostic
H301.00 Laryngotracheobronchitis cold Read diagnostic
H302.00 Wheezy bronchitis cold Read diagnostic
Hyu0200 [X]Acute tonsillitis due to other specified organisms cold Read diagnostic
Hyu1000 [X]Acute bronchitis due to other specified organisms cold Read diagnostic
R062.00 [D]Cough cold Read diagnostic
R062000 [D]Cough syncope cold Read diagnostic
R064.00 [D]Abnormal sputum cold Read diagnostic
R064000 [D]Sputum abnormal - amount cold Read diagnostic
R064100 [D]Sputum abnormal - colour cold Read diagnostic
R064200 [D]Sputum abnormal - odour cold Read diagnostic
R064300 [D]Abnormal sputum - tenacious cold Read diagnostic
R064z00 [D]Abnormal sputum NOS cold Read diagnostic
S120A00 Cough fracture cold Read diagnostic
S127100 Cough fracture of ribs cold Read diagnostic
f528.00 Acute bilateral otitis media cold Read diagnostic
h03..00 Acute tonsillitis cold Read diagnostic
h060.00 Acute bronchitis cold Read diagnostic
Rows: 78
Code Description Entity type Coding System (OXMIS Read) Category
0340BT STREPTOCOCCAL TONSILLITIS PROVEN cold OXMIS diagnostic
0340T TONSILLITIS STREPTOCOCCAL cold OXMIS diagnostic
101 TN VINCENT'S TONSILLITIS cold OXMIS diagnostic
3810 OTITIS MEDIA ACUTE cold OXMIS diagnostic
3810AE ABSCESS EAR cold OXMIS diagnostic
3810ML OTITIS MEDIA ACUTE LEFT cold OXMIS diagnostic
3810MR OTITIS MEDIA ACUTE RIGHT cold OXMIS diagnostic
3810TP OTITIS ACUTE SUPPURATIVE cold OXMIS diagnostic
3811A OTITIS MEDIA CHRONIC cold OXMIS diagnostic
3811AR RECURRENT OTITIS MEDIA cold OXMIS diagnostic
3811AT OTITIS MEDIA CATARRHAL cold OXMIS diagnostic
3811D OTITIS MEDIA CHRONIC SUPPURATIVE cold OXMIS diagnostic
3811E OTITIS MEDIA BILATERAL SUPPURATIVE cold OXMIS diagnostic
3811TR SECRETORY OTITIS MEDIA cold OXMIS diagnostic
3819 OTITIS MEDIA cold OXMIS diagnostic
3819DC EAR DISCHARGING cold OXMIS diagnostic
3819E OTITIS MEDIA BILATERAL cold OXMIS diagnostic
3819MP SUPPURATIVE OTITIS MEDIA cold OXMIS diagnostic
3819MR MYRINGITIS cold OXMIS diagnostic
3819N OTITIS cold OXMIS diagnostic
3819NB OTITIS CHRONIC SEROUS BILATERAL cold OXMIS diagnostic
3819NC OTITIS CHRONIC SEROUS UNILATERAL cold OXMIS diagnostic
3819RH OTORRHOEA cold OXMIS diagnostic
3819TH HAEMOTYMPANUM cold OXMIS diagnostic
3819TM TYMPANITIS cold OXMIS diagnostic
3829 OTITIS MEDIA WITH MASTOIDITIS cold OXMIS diagnostic
460 A COMMON COLD FEBRILE cold OXMIS diagnostic
460 AB COLD FEBRILE cold OXMIS diagnostic
460 B COMMON COLD NONFEBRILE cold OXMIS diagnostic
460 BA COLD NONFEBRILE cold OXMIS diagnostic
460 D COMMON COLD cold OXMIS diagnostic
462 CT SORE THROAT ACUTE cold OXMIS diagnostic
463 TONSILLITIS ACUTE cold OXMIS diagnostic
463 A TONSILLITIS cold OXMIS diagnostic
463 AL TONSILLITIS LINGUAL cold OXMIS diagnostic
463 AP PHARYNGO TONSILLITIS cold OXMIS diagnostic
463 B FOLLICULAR TONSILLITIS cold OXMIS diagnostic
463 BC TONSILLITIS BACTERIAL cold OXMIS diagnostic
463 MP TONSILS SYMPTOMS OF cold OXMIS diagnostic
463 NF INFLAMMATION TONSIL cold OXMIS diagnostic
465 URTI (UPPER RESPIRATORY TRACT INFECTION) cold OXMIS diagnostic
466 BC BRONCHITIS SUBACUTE cold OXMIS diagnostic
466 C BRONCHITIS ACUTE cold OXMIS diagnostic
466 FB BRONCHITIS FIBRINOUS ACUTE cold OXMIS diagnostic
466 V VIRAL BRONCHITIS cold OXMIS diagnostic
472 A INFLUENZAL BRONCHITIS cold OXMIS diagnostic
490 CT CATARRHAL BRONCHITIS cold OXMIS diagnostic
490 LT LARYNGOTRACHEOBRONCHITIS cold OXMIS diagnostic
490 T TRACHEOBRONCHITIS cold OXMIS diagnostic
490 WH WHEEZY BRONCHITIS cold OXMIS diagnostic
491 AC BRONCHITIS ACUTE ON CHRONIC cold OXMIS diagnostic
500 B TONSILLITIS RECURRENT cold OXMIS diagnostic
500 CH TONSILLITIS CHRONIC cold OXMIS diagnostic
501 PD PERITONSILLITIS cold OXMIS diagnostic
7833A COUGH cold OXMIS diagnostic
7833AB COUGH PAROXYSMAL cold OXMIS diagnostic
7833AC COUGH PAROXYSMAL WITH VOMITING cold OXMIS diagnostic
7833AP SPASMODIC COUGH cold OXMIS diagnostic
7833AR RECURRENT COUGH cold OXMIS diagnostic
7833B COUGH BRONCHIAL cold OXMIS diagnostic
7833BA PRODUCTIVE COUGH cold OXMIS diagnostic
7833BC COUGH CHESTY cold OXMIS diagnostic
7833CD DRY COUGH cold OXMIS diagnostic
7833CH COUGH CHRONIC cold OXMIS diagnostic
7833DB COUGH WORSE SUPINE cold OXMIS diagnostic
7833DF COUGH AFTER FEEDS cold OXMIS diagnostic
7833DP PAIN DUE COUGHING cold OXMIS diagnostic
7833E EVENING COUGH cold OXMIS diagnostic
7833G FEVER WITH COUGH cold OXMIS diagnostic
7833HP PAINFUL COUGH cold OXMIS diagnostic
7833MN MORNING COUGH cold OXMIS diagnostic
7833N NIGHT COUGH cold OXMIS diagnostic
7833PE COUGH PERSISTANT cold OXMIS diagnostic
7833PH PHLEGM COUGHING UP cold OXMIS diagnostic
7833PT COUGH WITH SPUTUM cold OXMIS diagnostic
7834AC COUGH WITH SPUTUM CLEAR cold OXMIS diagnostic
7834AH SPUTUM COUGHING UP cold OXMIS diagnostic
791 CH HEADACHE COUGH cold OXMIS diagnostic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH414/version/828/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH414/version/828/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH414', '828', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH414/version/828/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH414/version/828/export/codes/?format=json
CSV site_root/phenotypes/PH414/version/828/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH414', '828', api_client=client)

Version History

Version
ID
Name Owner Publish date
828 Cold ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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