Phenotype Library | phenotype: Influenza Immunisation

Influenza Immunisation

Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves

PH425

Version ID

850

Type

Drug

Data Sources

CPRD GOLD

Valid event data range

01/01/2000 - 31/12/2007

Sex

♀ Female ♂ Male

Agreement Date

2011-06-28

Coding system

Read codes v2 OXMIS codes

Collections

ClinicalCodes Repository Phenotype Library

Definition

Patient level data were extracted from the General Practice Research Database (GPRD), which contains anonymised, patient based data on morbidity, prescribing, treatment, and referral collected from over 500 general practices, covering about 7% of the UK population (4.4 million patients).14 Data are in Read code format—a hierarchical system used to code clinical data. Additional data on prescriptions and test results are available as free-text entries. We selected a sample of 148 practices that provided data to the GPRD continuously between January 2000 and December 2007, structured to include a range of list (patient panel) sizes. Selected practices were nationally representative in terms of patient sex and age distribution and area socioeconomic deprivation but had a relatively large average list size, reflecting a bias towards larger practices in the GPRD. Overall, the selected practices performed marginally better than national practices on the clinical indicators in the Quality and Outcomes Framework. A random selection of 4500 patients registered for at least one day between 1 January 2000 and 31 December 2007 was drawn from each practice. For practices with fewer than 4501 patients, all patients were selected. The final sample consisted of 653 500 patients. Patients with relevant conditions were identified from their diagnostic Read codes. Patients for whom targets were met were identified from the relevant Read codes and free-text terms.

Publications

Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves, Effect of financial incentives on incentivised and non-incentivised clinical activities: longitudinal analysis of data from the UK Quality and Outcomes Framework. BMJ, 342:d3590, 2011.

Clinical Code List

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C1776/4690 Influenza Immunisation - Primary Care - Read codes v2

Rows: 8

Code	Description	Entity type	Coding System (OXMIS Read)	Category
65E..00	Influenza vaccination	Influenza immunisation	Read	immunisation
9OX8.00	Has influenza vaccination at work	Influenza immunisation	Read	immunisation
U60K400	[X]Influenza vaccine causing adverse effects therapeutic use	Influenza immunisation	Read	immunisation
ZV04800	[V]Influenza vaccination	Influenza immunisation	Read	immunisation
ZV04811	[V]Flu - influenza vaccination	Influenza immunisation	Read	immunisation
n473.00		Influenza immunisation	Read	immunisation
n477.00		Influenza immunisation	Read	immunisation
n47d.00		Influenza immunisation	Read	immunisation

C1777/4692 Influenza Immunisation - Primary Care - OXMIS codes

Rows: 4

Code	Description	Entity type	Coding System (OXMIS Read)	Category
INFLUV1	1st INFLUENZA IMMUNISATION	Influenza immunisation	OXMIS	immunisation
INFLUV2	2nd INFLUENZA IMMUNISATION	Influenza immunisation	OXMIS	immunisation
INFLUV3	3rd INFLUENZA IMMUNISATION	Influenza immunisation	OXMIS	immunisation
Y42 IV	INFLUENZA VACCINE GIVEN	Influenza immunisation	OXMIS	immunisation

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH425/version/850/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH425/version/850/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH425', '850', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH425/version/850/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH425/version/850/export/codes/?format=json
CSV	site_root/phenotypes/PH425/version/850/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH425', '850', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
850	Influenza Immunisation	ieuan.scanlon	2021-10-06	currently shown