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Osteoporosis

Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves

Type
Disease or Syndrome
ID
PH430
Version ID
860
Data Sources
Valid event data range
01/01/2000 - 31/12/2007
Sex
Female, Male
Agreement Date
2011-06-28
Coding system
Read codes v2
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Patient level data were extracted from the General Practice Research Database (GPRD), which contains anonymised, patient based data on morbidity, prescribing, treatment, and referral collected from over 500 general practices, covering about 7% of the UK population (4.4 million patients).14 Data are in Read code format—a hierarchical system used to code clinical data. Additional data on prescriptions and test results are available as free-text entries. We selected a sample of 148 practices that provided data to the GPRD continuously between January 2000 and December 2007, structured to include a range of list (patient panel) sizes. Selected practices were nationally representative in terms of patient sex and age distribution and area socioeconomic deprivation but had a relatively large average list size, reflecting a bias towards larger practices in the GPRD. Overall, the selected practices performed marginally better than national practices on the clinical indicators in the Quality and Outcomes Framework. A random selection of 4500 patients registered for at least one day between 1 January 2000 and 31 December 2007 was drawn from each practice. For practices with fewer than 4501 patients, all patients were selected. The final sample consisted of 653 500 patients. Patients with relevant conditions were identified from their diagnostic Read codes. Patients for whom targets were met were identified from the relevant Read codes and free-text terms.

Publications

  • Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves, Effect of financial incentives on incentivised and non-incentivised clinical activities: longitudinal analysis of data from the UK Quality and Outcomes Framework. BMJ, 342:d3590, 2011.

Clinical Code List

Rows: 59
Code Description Entity type Category Coding System (Read)
585O.00 Quantitative ultrasound scan of heel - result osteoporotic osteoporosis diagnostic Read
58E4.00 Forearm DXA scan result osteoporotic osteoporosis diagnostic Read
58EA.00 Heel DXA scan result osteoporotic osteoporosis diagnostic Read
58EG.00 Hip DXA scan result osteoporotic osteoporosis diagnostic Read
58EM.00 Lumbar DXA scan result osteoporotic osteoporosis diagnostic Read
66a..00 Osteoporosis monitoring osteoporosis diagnostic Read
66a2.00 Osteoporosis treatment started osteoporosis diagnostic Read
66a3.00 Osteoporosis treatment stopped osteoporosis diagnostic Read
66a4.00 Osteoporosis treatment changed osteoporosis diagnostic Read
66a6.00 Osteoporosis - dietary advice osteoporosis diagnostic Read
66a7.00 Osteoporosis - dietary assessment osteoporosis diagnostic Read
66a8.00 Osteoporosis - exercise advice osteoporosis diagnostic Read
66a9.00 Osteoporosis - falls prevention osteoporosis diagnostic Read
66aA.00 Osteoporosis - treatment response osteoporosis diagnostic Read
66aE.00 Refer to osteoporosis specialist osteoporosis diagnostic Read
7230A OSTEOPOROSIS osteoporosis diagnostic Read
7230B OSTEOPOROSIS SENILIS osteoporosis diagnostic Read
7230D VERTEBRAL OSTEOPOROSIS osteoporosis diagnostic Read
7230PM OSTEOPOROSIS POSTMENOPAUSAL osteoporosis diagnostic Read
7230PT OSTEOPOROSIS POST-TRAUMATIC osteoporosis diagnostic Read
8HTS.00 Referral to osteoporosis clinic osteoporosis diagnostic Read
9N0h.00 Seen in osteoporosis clinic osteoporosis diagnostic Read
9Od0.00 Attends osteoporosis monitoring osteoporosis diagnostic Read
N330.00 Osteoporosis osteoporosis diagnostic Read
N330000 Osteoporosis; unspecified osteoporosis diagnostic Read
N330100 Senile osteoporosis osteoporosis diagnostic Read
N330200 Postmenopausal osteoporosis osteoporosis diagnostic Read
N330300 Idiopathic osteoporosis osteoporosis diagnostic Read
N330400 Dissuse osteoporosis osteoporosis diagnostic Read
N330500 Drug-induced osteoporosis osteoporosis diagnostic Read
N330600 Postoophorectomy osteoporosis osteoporosis diagnostic Read
N330700 Postsurgical malabsorption osteoporosis osteoporosis diagnostic Read
N330800 Localized osteoporosis - Lequesne osteoporosis diagnostic Read
N330900 Osteoporosis in multiple myelomatosis osteoporosis diagnostic Read
N330A00 Osteoporosis in endocrine disorders osteoporosis diagnostic Read
N330B00 Vertebral osteoporosis osteoporosis diagnostic Read
N330C00 Osteoporosis localized to spine osteoporosis diagnostic Read
N330D00 Osteoporosis due to corticosteroids osteoporosis diagnostic Read
N330z00 Osteoporosis NOS osteoporosis diagnostic Read
N331.14 Osteoporotic vertebral collapse osteoporosis diagnostic Read
N331200 Postoophorectomy osteoporosis with pathological fracture osteoporosis diagnostic Read
N331300 Osteoporosis of disuse with pathological fracture osteoporosis diagnostic Read
N331400 Postsurgical malabsorption osteoporosis with path fracture osteoporosis diagnostic Read
N331500 Drug-induced osteoporosis with pathological fracture osteoporosis diagnostic Read
N331600 Idiopathic osteoporosis with pathological fracture osteoporosis diagnostic Read
N331800 Osteoporosis + pathological fracture lumbar vertebrae osteoporosis diagnostic Read
N331900 Osteoporosis + pathological fracture thoracic vertebrae osteoporosis diagnostic Read
N331A00 Osteoporosis + pathological fracture cervical vertebrae osteoporosis diagnostic Read
N331B00 Postmenopausal osteoporosis with pathological fracture osteoporosis diagnostic Read
N331H00 Collapse of cervical vertebra due to osteoporosis osteoporosis diagnostic Read
N331J00 Collapse of lumbar vertebra due to osteoporosis osteoporosis diagnostic Read
N331K00 Collapse of thoracic vertebra due to osteoporosis osteoporosis diagnostic Read
N331L00 Collapse of vertebra due to osteoporosis NOS osteoporosis diagnostic Read
N331M00 Fragility fracture due to unspecified osteoporosis osteoporosis diagnostic Read
N374600 Osteoporotic kyphosis osteoporosis diagnostic Read
NyuB000 [X]Other osteoporosis with pathological fracture osteoporosis diagnostic Read
NyuB100 [X]Other osteoporosis osteoporosis diagnostic Read
NyuB200 [X]Osteoporosis in other disorders classified elsewhere osteoporosis diagnostic Read
NyuB800 [X]Unspecified osteoporosis with pathological fracture osteoporosis diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH430/version/860/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH430/version/860/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH430', '860', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH430/version/860/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH430/version/860/export/codes/?format=json
CSV site_root/phenotypes/PH430/version/860/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH430', '860', api_client=client)

Version History

Version
ID
Name Owner Publish date
860 Osteoporosis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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