Phenotype Library | phenotype: Pneumococcal Vaccin

Pneumococcal Vaccin

Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves

PH433

Version ID

866

Type

Drug

Data Sources

CPRD GOLD

Valid event data range

01/01/2000 - 31/12/2007

Sex

♀ Female ♂ Male

Agreement Date

2011-06-28

Coding system

GPRD product codes

Collections

ClinicalCodes Repository Phenotype Library

Definition

Patient level data were extracted from the General Practice Research Database (GPRD), which contains anonymised, patient based data on morbidity, prescribing, treatment, and referral collected from over 500 general practices, covering about 7% of the UK population (4.4 million patients).14 Data are in Read code format—a hierarchical system used to code clinical data. Additional data on prescriptions and test results are available as free-text entries. We selected a sample of 148 practices that provided data to the GPRD continuously between January 2000 and December 2007, structured to include a range of list (patient panel) sizes. Selected practices were nationally representative in terms of patient sex and age distribution and area socioeconomic deprivation but had a relatively large average list size, reflecting a bias towards larger practices in the GPRD. Overall, the selected practices performed marginally better than national practices on the clinical indicators in the Quality and Outcomes Framework. A random selection of 4500 patients registered for at least one day between 1 January 2000 and 31 December 2007 was drawn from each practice. For practices with fewer than 4501 patients, all patients were selected. The final sample consisted of 653 500 patients. Patients with relevant conditions were identified from their diagnostic Read codes. Patients for whom targets were met were identified from the relevant Read codes and free-text terms.

Publications

Tim Doran, Evangelos Kontopantelis, Jose M Valderas, Stephen Campbell, Martin Roland, Chris Salisbury, David Reeves, Effect of financial incentives on incentivised and non-incentivised clinical activities: longitudinal analysis of data from the UK Quality and Outcomes Framework. BMJ, 342:d3590, 2011.

Clinical Code List

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C1788/4714 Pneumococcal Vaccin - Primary Care - GPRD product codes

Rows: 6

Code	Description	Entity type	Category	Coding System (GPRD_product_code)
10904001	PNU-IMUNE vaccine	Pneumococcal vaccine	drug	GPRD_product_code
4530007	PNEUMOVAX VAC	Pneumococcal vaccine	drug	GPRD_product_code
6007001	PNEUMOCOCCAL 23-VALENT POLYSACCHARIDE vaccine	Pneumococcal vaccine	drug	GPRD_product_code
6008001	PNEUMOVAX II vaccine	Pneumococcal vaccine	drug	GPRD_product_code
7920001	PNEUMOCOCCAL 7-VALENT SACCHARIDE CONJUGATED adsorbed vaccine	Pneumococcal vaccine	drug	GPRD_product_code
9289001	PREVENAR vaccine	Pneumococcal vaccine	drug	GPRD_product_code

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH433/version/866/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH433/version/866/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH433', '866', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH433/version/866/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH433/version/866/export/codes/?format=json
CSV	site_root/phenotypes/PH433/version/866/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH433', '866', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
866	Pneumococcal Vaccin	ieuan.scanlon	2021-10-06	currently shown