End stage renal disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH45 / 90 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/1999 - 01/07/2016
    Coding System
    Read codes v2Med codesICD10 codesOPCS4 codes
    Data Sources
    CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
    Collections
    CALIBERPhenotype Library
    Tags
    No data

  2. Definition

    At the specified date, a patient is defined as having had 'End stage renal disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

    Primary care

    1. 'End stage renal disease' diagnosis or history of diagnosis or procedure during a consultation

    OR

    1. Meets the following criteria (definitions as for CKD):

    IF egfr_ckdepi recorded on or before specified date, THEN

    IF egfr_ckdepi <15 (index 90 <15 above and any as before care< classify date date) days egfr_ckdepi esrd greater having if index min ml most on p recent secondary specified than the then>

    1. ALL diagnoses of 'End stage renal disease' or history of diagnosis or procedure during a hospitalization Secondary care (OPCS4)

    2. ALL procedures for 'End stage renal disease' during a hospitalization

  3. Implementation

    Phenoflow ID
    https://kclhi.org/phenoflow/phenotype/download/142

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

      (DOI:10.1016/S2589-7500(19)30012-3)

    Citation Requirements

    No data

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH45/version/90/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH45',
     version_id=90
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH45',
     version_id=90
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH45/version/90/export/codes/?format=json
    CSV site_root/phenotypes/PH45/version/90/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH45',
     version_id=90
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH45',
     version_id=90
    )

  7. Version History

    Version IDNameOwnerPublish date
    90 End stage renal disease ieuan.scanlon2021-10-06currently shown