End stage renal disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH45 / 90 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/1999 - 01/07/2016
    Coding System
    ICD10 codesRead codes v2OPCS4 codesMed codes
    Data Sources
    CPRD GOLD
    HES Admitted Patient Care data for CPRD GOLD
    Collections
    CALIBERPhenotype Library
    Tags
    No data
    Ontology
    No data

  2. Definition

    At the specified date, a patient is defined as having had 'End stage renal disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

    Primary care

    1. 'End stage renal disease' diagnosis or history of diagnosis or procedure during a consultation

    OR

    1. Meets the following criteria (definitions as for CKD):

    IF egfr_ckdepi recorded on or before specified date, THEN

    IF egfr_ckdepi <15 ml/min on the most recent date (index date) before the specified date AND IF egfr_ckdepi <15 ml/min on any date greater than 90 days BEFORE the index date above THEN classify as having ESRD Secondary care

    1. ALL diagnoses of 'End stage renal disease' or history of diagnosis or procedure during a hospitalization Secondary care (OPCS4)

    2. ALL procedures for 'End stage renal disease' during a hospitalization

  3. Implementation

    Phenoflow ID

    Please see the PhenoFLOW website here for more information on workflow-based Phenotypes.

    PhenoFLOW Reference: 142

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    Related publications

    • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

      (DOI: 10.1016/S2589-7500(19)30012-3)

    Citation Example

    Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH45 / 90 - End stage renal disease. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH45/version/90/detail/. [Accessed 25 April 2025]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH45/version/90/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH45',
     version_id=90
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH45',
     version_id=90
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH45/version/90/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH45',
     version_id=90
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH45',
     version_id=90
    )

  7. Version History

    Version IDNameOwnerPublish date
    End stage renal disease ieuan.scanlon2021-10-06 16:00