Phenotype Library | phenotype: Giant Cell arteritis

Giant Cell arteritis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH46

Version ID

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Giant Cell arteritis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Giant Cell arteritis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Giant Cell arteritis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/146

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C815/2769 Giant Cell arteritis - Primary care - Read codes v2

Rows: 7

Code	Description	Disease	Medcode	Category
G755.00	Giant cell arteritis	Giant Cell arteritis	10432.0	Diagnosis of Giant Cell arteritis
G755000	Cranial arteritis	Giant Cell arteritis	9843.0	Diagnosis of Giant Cell arteritis
G755100	Temporal arteritis	Giant Cell arteritis	3275.0	Diagnosis of Giant Cell arteritis
G755200	Horton's disease	Giant Cell arteritis	49149.0	Diagnosis of Giant Cell arteritis
G755z00	Giant cell arteritis NOS	Giant Cell arteritis	68403.0	Diagnosis of Giant Cell arteritis
N200.00	Giant cell arteritis with polymyalgia rheumatica	Giant Cell arteritis	29472.0	Diagnosis of Giant Cell arteritis
Nyu4100	[X]Other giant cell arteritis	Giant Cell arteritis	53789.0	Diagnosis of Giant Cell arteritis

C816/2771 Giant Cell arteritis - Primary care - Med codes

Rows: 7

Code	Description	Disease	ReadcodeDescr	Readcode
10432.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Giant cell arteritis	G755.00
29472.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Giant cell arteritis with polymyalgia rheumatica	N200.00
3275.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Temporal arteritis	G755100
49149.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Horton's disease	G755200
53789.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	[X]Other giant cell arteritis	Nyu4100
68403.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Giant cell arteritis NOS	G755z00
9843.0	Diagnosis of Giant Cell arteritis	Giant Cell arteritis	Cranial arteritis	G755000

C817/2773 Giant Cell arteritis - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
M31.5	Giant cell arteritis with polymyalgia rheumatica	Giant Cell arteritis	Diagnosis of Giant Cell arteritis
M31.6	Other giant cell arteritis	Giant Cell arteritis	Diagnosis of Giant Cell arteritis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH46/version/92/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH46/version/92/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH46', '92', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH46/version/92/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH46/version/92/export/codes/?format=json
CSV	site_root/phenotypes/PH46/version/92/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH46', '92', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
92	Giant Cell arteritis	ieuan.scanlon	2021-10-06	currently shown