Phenotype Library | phenotype: Gastro-oesophageal reflux disease

Gastro-oesophageal reflux disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH48

Version ID

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes OPCS4 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Gastro-oesophageal reflux disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Gastro-oesophageal reflux disease' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Gastro-oesophageal reflux disease' or history of diagnosis during a hospitalization OR Secondary care (OPCS4)
ALL procedures for 'Gastro-oesophageal reflux disease' during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/151

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C821/2781 Gastro-oesophageal reflux disease - Primary care - Read codes v2

Rows: 24

C822/2783 Gastro-oesophageal reflux disease - Primary care - Med codes

Rows: 24

C823/2785 Gastro-oesophageal reflux disease - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K21	Gastro-oesophageal reflux disease	Gastro-oesophageal reflux disease	Diagnosis of Gastro-oesophageal reflux disease

C824/2787 Gastro-oesophageal reflux disease - Secondary care - Procedures - OPCS4 codes

Rows: 15

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH48/version/96/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH48/version/96/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH48', '96', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH48/version/96/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH48/version/96/export/codes/?format=json
CSV	site_root/phenotypes/PH48/version/96/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH48', '96', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
96	Gastro-oesophageal reflux disease	ieuan.scanlon	2021-10-06	currently shown

Code	Description	Disease	Medcode	Category
171J.00	Reflux cough	Gastro-oesophageal reflux disease	19470.0	Diagnosis of Gastro-oesophageal reflux disease
1957.00	Gastric reflux	Gastro-oesophageal reflux disease	7577.0	Diagnosis of Gastro-oesophageal reflux disease
760L.00	Antireflux operations	Gastro-oesophageal reflux disease	18211.0	Procedure for Gastro-oesophageal reflux disease
760L.11	Oesophageal reflux operations	Gastro-oesophageal reflux disease	17263.0	Procedure for Gastro-oesophageal reflux disease
760L000	Antireflux fundoplication using thoracic approach	Gastro-oesophageal reflux disease	14713.0	Procedure for Gastro-oesophageal reflux disease
760L100	Antireflux operation using thoracic approach NEC	Gastro-oesophageal reflux disease	53657.0	Procedure for Gastro-oesophageal reflux disease
760L111	Antireflux procedure using thoracic approach NEC	Gastro-oesophageal reflux disease	68276.0	Procedure for Gastro-oesophageal reflux disease
760L200	Antireflux fundoplication using abdominal approach	Gastro-oesophageal reflux disease	17610.0	Procedure for Gastro-oesophageal reflux disease
760L300	Antireflux gastropexy	Gastro-oesophageal reflux disease	45360.0	Procedure for Gastro-oesophageal reflux disease
760L311	Antireflux gastroplasty	Gastro-oesophageal reflux disease	48146.0	Procedure for Gastro-oesophageal reflux disease
760L400	Antireflux procedure and gastroplasty HFQ	Gastro-oesophageal reflux disease	103564.0	Procedure for Gastro-oesophageal reflux disease
760Ly00	Other specified antireflux operation	Gastro-oesophageal reflux disease	34005.0	Procedure for Gastro-oesophageal reflux disease
760Lz00	Antireflux operation NOS	Gastro-oesophageal reflux disease	28619.0	Procedure for Gastro-oesophageal reflux disease
760M.00	Revision of antireflux operations	Gastro-oesophageal reflux disease	51400.0	Procedure for Gastro-oesophageal reflux disease
760Mz00	Revision of antireflux operation NOS	Gastro-oesophageal reflux disease	67258.0	Procedure for Gastro-oesophageal reflux disease
J101100	Reflux oesophagitis	Gastro-oesophageal reflux disease	2535.0	Diagnosis of Gastro-oesophageal reflux disease
J101111	Acid reflux	Gastro-oesophageal reflux disease	15054.0	Diagnosis of Gastro-oesophageal reflux disease
J101112	Gastro-oesophageal reflux with oesophagitis	Gastro-oesophageal reflux disease	7104.0	Diagnosis of Gastro-oesophageal reflux disease
J101113	Oesophageal reflux with oesophagitis	Gastro-oesophageal reflux disease	16605.0	Diagnosis of Gastro-oesophageal reflux disease
J10y400	Oesopheal reflux without mention of oesophagitis	Gastro-oesophageal reflux disease	25610.0	Diagnosis of Gastro-oesophageal reflux disease
J10y411	Oesophageal reflux	Gastro-oesophageal reflux disease	1327.0	Diagnosis of Gastro-oesophageal reflux disease
J10y412	Gastro-oesophageal reflux	Gastro-oesophageal reflux disease	984.0	Diagnosis of Gastro-oesophageal reflux disease
J10y413	Acid reflux	Gastro-oesophageal reflux disease	2281.0	Diagnosis of Gastro-oesophageal reflux disease
J10y500	Laryngopharyngeal reflux	Gastro-oesophageal reflux disease	19111.0	Diagnosis of Gastro-oesophageal reflux disease