Phenotypes > Respiratory Tract Infection

Print

Respiratory Tract Infection

Rebecca M Joseph, Mohammad Movahedi, William G Dixon, Deborah P M Symmons

ID
PH487
Version ID
974
Type
Disease or Syndrome
Data Sources
CPRD GOLD
Valid event data range
01/01/1998 - 10/01/2012
Sex
♀  Female ♂  Male
Agreement Date
2016-10-06
Coding system
ICD10 codes ICD9 codes
Collections
ClinicalCodes Repository Phenotype Library
Tags
No tags

Definition

Objective:

To investigate the association between smoking status and smoking cessation with mortality in patients with rheumatoid arthritis (RA).

Methods:

An incident cohort of patients with RA was identified using the Clinical Practice Research Datalink, a database of UK primary care electronic medical records. Time-varying smoking status, years of cessation, and amount smoked were determined frompatients’medical records. The date and underlying cause of deathwere identified by linkagewith Office for National Statistics records. The associations between smoking status and smoking cessation with all-cause and causespecific mortality (circulatory disease, all cancers, lung cancer, respiratory disease, and respiratory infection) were investigated using adjusted Cox (all-causemortality) and Fine-Gray (cause-specificmortality) regression.

Results:

The cohort comprised 5,677 patients (median age 61.4 years, 68% women), with 40% as never smokers, 34% former smokers, and 26% current smokers at baseline. Compared to never smoking, current smokingwas associated with an increased risk of all-causemortality (hazard ratio 1.98 [95% confidence interval (95% CI) 1.56, 2.53]), andmortality due to circulatory disease (subdistribution hazard ratio [SHR] 1.96 [95% CI 1.33, 2.90]) and lung cancer (SHR 23.2 [95% CI 5.15, 105]). Each year of smoking cessation was associated with a decreased risk of all-cause mortality (former heavy smokers SHR 0.85 [95% CI 0.77, 0.94], former light smokers SHR 0.90 [95%CI 0.84, 0.97]).

Conclusion:

Current smoking is associated with an increased risk of all-cause, cardiovascular, and lung cancermortality in patientswith RA. Each year of cessation is associated with a reduced risk of all-causemortality. This information may prove helpful in smoking cessation programs for patients with RA.

Publications

  • Rebecca M Joseph, Mohammad Movahedi, William G Dixon, Deborah P M Symmons, Smoking-Related Mortality in Patients With Early Rheumatoid Arthritis: A Retrospective Cohort Study Using the Clinical Practice Research Datalink. Authritis Care and Research, 68(11), 1598-1606, 2016.

Clinical Code List

Expand All  /  Collapse All
Rows: 167
Code Description Entity type Coding System (ICD-10 ICD-9) Category
100 PRIMARY TB COMPLEX UNSP res42: respiratory tract infection ICD-9 diagnostic
100.1 PRIMARY TB COMPLEX W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
100.2 PRIMARY TB COMPLEX EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
100.3 PRIMARY TB COMPLEX MICRO DX res42: respiratory tract infection ICD-9 diagnostic
100.4 PRIMARY TB COMPLEX CULT DX res42: respiratory tract infection ICD-9 diagnostic
100.5 PRIMARY TB COMPLEX HISTO DX res42: respiratory tract infection ICD-9 diagnostic
100.6 PRIMARY TB COMPLEX OTH res42: respiratory tract infection ICD-9 diagnostic
101 TB PLEURISY PRIMARY UNSP res42: respiratory tract infection ICD-9 diagnostic
101.1 TB PLEURISY PRIMARY W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
101.2 TB PLEURISY PRIMARY EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
101.3 TB PLEURISY PRIMARY MICRO DX res42: respiratory tract infection ICD-9 diagnostic
101.4 TB PLEURISY PRIMARY CULT DX res42: respiratory tract infection ICD-9 diagnostic
101.5 TB PLEURISY PRIMARY HISTO DX res42: respiratory tract infection ICD-9 diagnostic
101.6 TB PLEURISY PRIMARY OTH res42: respiratory tract infection ICD-9 diagnostic
108 OTH PRIMARY PROG TB UNSP res42: respiratory tract infection ICD-9 diagnostic
108.1 OTH PRIMARY PROG TB W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
108.2 OTH PRIMARY PROG TB EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
108.3 OTH PRIMARY PROG TB MICRO DX res42: respiratory tract infection ICD-9 diagnostic
108.4 OTH PRIMARY PROG TB CULT DX res42: respiratory tract infection ICD-9 diagnostic
108.5 OTH PRIMARY PROG TB HISTO DX res42: respiratory tract infection ICD-9 diagnostic
108.6 OTH PRIMARY PROG TB OTH METHODS res42: respiratory tract infection ICD-9 diagnostic
109 UNSP PRIMARY TB UNSP res42: respiratory tract infection ICD-9 diagnostic
109.1 PRIMARY TB UNSP W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
109.2 PRIMARY TB UNSP EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
109.3 PRIMARY TB UNSP MICRO DX res42: respiratory tract infection ICD-9 diagnostic
109.4 PRIMARY TB UNSP CULT DX res42: respiratory tract infection ICD-9 diagnostic
109.5 PRIMARY TB UNSP HISTO DX res42: respiratory tract infection ICD-9 diagnostic
109.6 PRIMARY TB UNSP OTH res42: respiratory tract infection ICD-9 diagnostic
110 TB LUNG INFILTRATIVE UNSP res42: respiratory tract infection ICD-9 diagnostic
110.1 TB LUNG INFILTRATIVE W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
110.2 TB LUNG INFILTRATIVE EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
110.3 TB LUNG INFILTRATIVE MICRO DX res42: respiratory tract infection ICD-9 diagnostic
110.4 TB LUNG INFILTRATIVE CULT DX res42: respiratory tract infection ICD-9 diagnostic
110.5 TB LUNG INFILTRATIVE HISTO DX res42: respiratory tract infection ICD-9 diagnostic
110.6 TB LUNG INFILTRATIVE OTH res42: respiratory tract infection ICD-9 diagnostic
111 TB LUNG NODULAR UNSP res42: respiratory tract infection ICD-9 diagnostic
112 TB LUNG W/CAVITY UNSP res42: respiratory tract infection ICD-9 diagnostic
112.1 TB LUNG W/CAVITY W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
112.2 TB LUNG W/CAVITY EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
112.3 TB LUNG W/CAVITY MICRO DX res42: respiratory tract infection ICD-9 diagnostic
112.4 TB LUNG W/CAVITY CULT DX res42: respiratory tract infection ICD-9 diagnostic
112.5 TB LUNG W/CAVITY HISTO DX res42: respiratory tract infection ICD-9 diagnostic
112.6 TB LUNG W/CAVITY OTH res42: respiratory tract infection ICD-9 diagnostic
113 TB BRONCHUS UNSP res42: respiratory tract infection ICD-9 diagnostic
113.1 TB BRONCHUS W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
113.2 TB BRONCHUS EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
113.3 TB BRONCHUS MICRO DX res42: respiratory tract infection ICD-9 diagnostic
113.4 TB BRONCHUS CULT DX res42: respiratory tract infection ICD-9 diagnostic
113.5 TB BRONCHUS HISTO DX res42: respiratory tract infection ICD-9 diagnostic
113.6 TB BRONCHUS OTH res42: respiratory tract infection ICD-9 diagnostic
114 TB LUNG FIBROSIS UNSP res42: respiratory tract infection ICD-9 diagnostic
114.1 TB LUNG FIBROSIS W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
114.2 TB LUNG FIBROSIS EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
114.3 TB LUNG FIBROSIS MICRO DX res42: respiratory tract infection ICD-9 diagnostic
114.4 TB LUNG FIBROSIS CULT DX res42: respiratory tract infection ICD-9 diagnostic
114.5 TB LUNG FIBROSIS HISTO DX res42: respiratory tract infection ICD-9 diagnostic
114.6 TB LUNG FIBROSIS OTH res42: respiratory tract infection ICD-9 diagnostic
115 TB BRONCHIECTASIS UNSP res42: respiratory tract infection ICD-9 diagnostic
115.1 TB BRONCHIECTASIS W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
115.2 TB BRONCHIECTASIS EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
115.3 TB BRONCHIECTASIS MICRO DX res42: respiratory tract infection ICD-9 diagnostic
115.4 TB BRONCHIECTASIS CULT DX res42: respiratory tract infection ICD-9 diagnostic
115.5 TB BRONCHIECTASIS HISTO DX res42: respiratory tract infection ICD-9 diagnostic
115.6 TB BRONCHIECTASIS OTH res42: respiratory tract infection ICD-9 diagnostic
115.9 HISTOPLASMOSIS PNEUMONIA UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
116 TB PNEUMONIA UNSP res42: respiratory tract infection ICD-9 diagnostic
116.1 TB PNEUMONIA W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
116.2 TB PNEUMONIA EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
116.3 TB PNEUMONIA MICRO DX res42: respiratory tract infection ICD-9 diagnostic
116.4 TB PNEUMONIA CULT DX res42: respiratory tract infection ICD-9 diagnostic
116.5 TB PNEUMONIA HISTO DX res42: respiratory tract infection ICD-9 diagnostic
116.6 TB PNEUMONIA OTH res42: respiratory tract infection ICD-9 diagnostic
117 TB PNEUMOTHORAX UNSP res42: respiratory tract infection ICD-9 diagnostic
117.1 TB PNEUMOTHORAX W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
117.2 TB PNEUMOTHORAX EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
117.3 TB PNEUMOTHORAX MICRO DX res42: respiratory tract infection ICD-9 diagnostic
117.4 TB PNEUMOTHORAX CULT DX res42: respiratory tract infection ICD-9 diagnostic
117.5 TB PNEUMOTHORAX HISTO DX res42: respiratory tract infection ICD-9 diagnostic
117.6 TB PNEUMOTHORAX OTH res42: respiratory tract infection ICD-9 diagnostic
118 OTH PULMONARY TB UNSP res42: respiratory tract infection ICD-9 diagnostic
118.1 OTH PULMONARY TB W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
118.2 OTH PULMONARY TB EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
118.3 OTH PULMONARY TB MICRO DX res42: respiratory tract infection ICD-9 diagnostic
118.4 OTH PULMONARY TB CULT DX res42: respiratory tract infection ICD-9 diagnostic
118.5 OTH PULMONARY TB HISTO DX res42: respiratory tract infection ICD-9 diagnostic
118.6 OTH PULMONARY TB OTH res42: respiratory tract infection ICD-9 diagnostic
119 UNSP PULMONARY TB UNSP res42: respiratory tract infection ICD-9 diagnostic
119.1 UNSP PULMONARY TB W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
119.2 UNSP PULMONARY TB RESULT UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
119.3 UNSP PULMONARY TB MICRO DX res42: respiratory tract infection ICD-9 diagnostic
119.4 UNSP PULMONARY TB CULT DX res42: respiratory tract infection ICD-9 diagnostic
119.5 UNSP PULMONARY TB HISTO DX res42: respiratory tract infection ICD-9 diagnostic
119.6 UNSP PULMONARY TB OTH METHOD res42: respiratory tract infection ICD-9 diagnostic
120 TB PLEURISY UNSP res42: respiratory tract infection ICD-9 diagnostic
120.1 TB PLEURISY W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
120.2 TB PLEURISY EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
120.3 TB PLEURISY MICRO DX res42: respiratory tract infection ICD-9 diagnostic
120.4 TB PLEURISY CULT DX res42: respiratory tract infection ICD-9 diagnostic
120.5 TB PLEURISY HISTOLOGY DX res42: respiratory tract infection ICD-9 diagnostic
120.6 TB PLEURISY OTH res42: respiratory tract infection ICD-9 diagnostic
121 TB THORACIC NODES UNSP res42: respiratory tract infection ICD-9 diagnostic
121.1 TB THORACIC NODE W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
121.2 TB THORACIC NODE EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
121.3 TB THORACIC NODE MICRO DX res42: respiratory tract infection ICD-9 diagnostic
121.4 TB THORACIC NODE CULT DX res42: respiratory tract infection ICD-9 diagnostic
121.5 TB THORACIC NODE HISTO DX res42: respiratory tract infection ICD-9 diagnostic
121.6 TB THORACIC NODE OTH res42: respiratory tract infection ICD-9 diagnostic
122 ISOLATED TRACHEAL TB UNSP res42: respiratory tract infection ICD-9 diagnostic
122.1 ISOLATED TRACHEAL TB W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
122.2 ISOLATED TRACH TB EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
122.3 ISOLATED TRACHEAL TB MICRO DX res42: respiratory tract infection ICD-9 diagnostic
122.4 ISOLATED TRACHEAL TB CULT DX res42: respiratory tract infection ICD-9 diagnostic
122.5 ISOLATED TRACHEAL TB HISTO DX res42: respiratory tract infection ICD-9 diagnostic
122.6 ISOLATED TRACHEAL TB OTH res42: respiratory tract infection ICD-9 diagnostic
123 TB LARYNGITIS UNSP res42: respiratory tract infection ICD-9 diagnostic
123.1 TB LARYNGITIS W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
123.2 TB LARYNGITIS EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
123.3 TB LARYNGITIS MICRO DX res42: respiratory tract infection ICD-9 diagnostic
123.4 TB LARYNGITIS CULT DX res42: respiratory tract infection ICD-9 diagnostic
123.5 TB LARYNGITIS HISTO DX res42: respiratory tract infection ICD-9 diagnostic
123.6 TB LARYNGITIS OTH res42: respiratory tract infection ICD-9 diagnostic
128 OTH RESPIRATORY TB UNSP res42: respiratory tract infection ICD-9 diagnostic
128.1 OTH RESPIRATORY TB W/O EXAM res42: respiratory tract infection ICD-9 diagnostic
128.2 OTH RESPIRATORY TB EXAM UNKNOWN res42: respiratory tract infection ICD-9 diagnostic
128.3 OTH RESPIRATORY TB MICRO DX res42: respiratory tract infection ICD-9 diagnostic
128.4 OTH RESPIRATORY TB CULT DX res42: respiratory tract infection ICD-9 diagnostic
128.5 OTH RESPIRATORY TB HISTO DX res42: respiratory tract infection ICD-9 diagnostic
128.6 OTH RESPIRATORY TB OTH res42: respiratory tract infection ICD-9 diagnostic
182.8 PNEUMONIA DUE TO OTHER SPECIFIED BACTERIA res42: respiratory tract infection ICD-9 diagnostic
466 ACUTE BRONCHITIS res42: respiratory tract infection ICD-9 diagnostic
466.1 ACUTE BRONCHIOLITIS DUE TO RESPIRATORY SYNCYTIAL VIRUS (RSV) res42: respiratory tract infection ICD-9 diagnostic
480 PNEUMONIA DUE TO ADENOVIRUS res42: respiratory tract infection ICD-9 diagnostic
480.1 PNEUMONIA DUE TO RESPIRATORY SYNCYTIAL VIRUS res42: respiratory tract infection ICD-9 diagnostic
480.2 PNEUMONIA DUE TO PARAINFLUENZA VIRUS res42: respiratory tract infection ICD-9 diagnostic
480.3 PNEUMONIA DUE TO SARS-ASSOCIATED CORONAVIRUS res42: respiratory tract infection ICD-9 diagnostic
480.8 PNEUMONIA DUE TO OTHER VIRUS NOT ELSEWHERE CLASSIFIED res42: respiratory tract infection ICD-9 diagnostic
480.9 VIRAL PNEUMONIA UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
481 PNEUMOCOCCAL PNEUMONIA [STREPTOCOCCUS PNEUMONIAE PNEUMONIA] res42: respiratory tract infection ICD-9 diagnostic
482 PNEUMONIA DUE TO KLEBSIELLA PNEUMONIAE res42: respiratory tract infection ICD-9 diagnostic
482.1 PNEUMONIA DUE TO PSEUDOMONAS res42: respiratory tract infection ICD-9 diagnostic
482.2 PNEUMONIA DUE TO HEMOPHILUS INFLUENZAE [H. INFLUENZAE] res42: respiratory tract infection ICD-9 diagnostic
482.3 PNEUMONIA DUE TO STREPTOCOCCUS GROUP B res42: respiratory tract infection ICD-9 diagnostic
482.4 PNEUMONIA DUE TO STAPHYLOCOCCUS UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
482.8 PNEUMONIA DUE TO ESCHERICHIA COLI [E.COLI] res42: respiratory tract infection ICD-9 diagnostic
482.9 BACTERIAL PNEUMONIA UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
483 PNEUMONIA DUE TO MYCOPLASMA PNEUMONIAE res42: respiratory tract infection ICD-9 diagnostic
483.1 PNEUMONIA DUE TO CHLAMYDIA res42: respiratory tract infection ICD-9 diagnostic
483.2 CHRONIC OBSTRUCTIVE ASTHMA WITH STATUS ASTHMATICUS res42: respiratory tract infection ICD-9 diagnostic
483.8 PNEUMONIA DUE TO OTHER SPECIFIED ORGANISM res42: respiratory tract infection ICD-9 diagnostic
484.7 PNEUMONIA IN OTHER SYSTEMIC MYCOSES res42: respiratory tract infection ICD-9 diagnostic
484.8 PNEUMONIA IN OTHER INFECTIOUS DISEASES CLASSIFIED ELSEWHERE res42: respiratory tract infection ICD-9 diagnostic
485 BRONCHOPNEUMONIA ORGANISM UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
486 PNEUMONIA ORGANISM UNSPECIFIED res42: respiratory tract infection ICD-9 diagnostic
487 INFLUENZA WITH PNEUMONIA res42: respiratory tract infection ICD-9 diagnostic
490 BRONCHITIS NOT SPECIFIED AS ACUTE OR CHRONIC res42: respiratory tract infection ICD-9 diagnostic
491.2 OBSTRUCTIVE CHRONIC BRONCHITIS, WITH ACUTE BRONCHITIS res42: respiratory tract infection ICD-9 diagnostic
493.2 CHRONIC OBSTRUCTIVE ASTHMA WITH (ACUTE) EXACERBATION res42: respiratory tract infection ICD-9 diagnostic
496 CHRONIC AIRWAY OBSTRUCTION NOT ELSEWHERE CLASSIFIED res42: respiratory tract infection ICD-9 diagnostic
510 EMPYEMA WITH FISTULA res42: respiratory tract infection ICD-9 diagnostic
510.9 EMPYEMA WITHOUT FISTULA res42: respiratory tract infection ICD-9 diagnostic
511 PLEURISY WITHOUT EFFUSION OR CURRENT TUBERCULOSIS res42: respiratory tract infection ICD-9 diagnostic
513 ABSCESS OF LUNG res42: respiratory tract infection ICD-9 diagnostic
513.1 ABSCESS OF MEDIASTINUM res42: respiratory tract infection ICD-9 diagnostic
514 PULMONARY CONGESTION AND HYPOSTASIS res42: respiratory tract infection ICD-9 diagnostic
517 RHEUMATIC PNEUMONIA res42: respiratory tract infection ICD-9 diagnostic
530.8 TRACHEOESOPHAGEAL FISTULA res42: respiratory tract infection ICD-9 diagnostic
730 ORNITHOSIS WITH PNEUMONIA res42: respiratory tract infection ICD-9 diagnostic
Rows: 85
Code Description Entity type Coding System (ICD-10 ICD-9) Category
A15 Respiratory tuberculosis, bacteriologically and histologically confirmed res42: respiratory tract infection ICD-10 diagnostic
A15.0 Tuberculosis of lung, confirmed by sputum microscopy with or without culture res42: respiratory tract infection ICD-10 diagnostic
A15.1 Tuberculosis of lung, confirmed by culture only res42: respiratory tract infection ICD-10 diagnostic
A15.2 Tuberculosis of lung, confirmed histologically res42: respiratory tract infection ICD-10 diagnostic
A15.3 Tuberculosis of lung, confirmed by unspecified means res42: respiratory tract infection ICD-10 diagnostic
A15.4 Tuberculosis of intrathoracic lymph nodes, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A15.5 Tuberculosis of larynx, trachea and bronchus, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A15.6 Tuberculous pleurisy, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A15.7 Primary respiratory tuberculosis, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A15.8 Other respiratory tuberculosis, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A15.9 Respiratory tuberculosis unspecified, confirmed bacteriologically and histologically res42: respiratory tract infection ICD-10 diagnostic
A16 Respiratory tuberculosis, not confirmed bacteriologically or histologically res42: respiratory tract infection ICD-10 diagnostic
A16.0 Tuberculosis of lung, bacteriologically and histologically negative res42: respiratory tract infection ICD-10 diagnostic
A16.1 Tuberculosis of lung, bacteriological and histological examination not done res42: respiratory tract infection ICD-10 diagnostic
A16.2 Tuberculosis of lung, without mention of bacteriological or histological confirmation res42: respiratory tract infection ICD-10 diagnostic
A16.3 Tuberculosis of intrathoracic lymph nodes, without mention of bacteriological or histological confir res42: respiratory tract infection ICD-10 diagnostic
A16.4 Tuberculosis of larynx, trachea and bronchus, without mention of bacteriological or histological con res42: respiratory tract infection ICD-10 diagnostic
A16.5 Tuberculous pleurisy, without mention of bacteriological or histological confirmation res42: respiratory tract infection ICD-10 diagnostic
A16.7 Primary respiratory tuberculosis without mention of bacteriological or histological confirmation res42: respiratory tract infection ICD-10 diagnostic
A16.8 Other respiratory tuberculosis, without mention of bacteriological or histological confirmation res42: respiratory tract infection ICD-10 diagnostic
A16.9 Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmatio res42: respiratory tract infection ICD-10 diagnostic
A48.1 Legionnaires disease res42: respiratory tract infection ICD-10 diagnostic
J12 Viral pneumonia, not elsewhere classified res42: respiratory tract infection ICD-10 diagnostic
J12.0 Adenoviral pneumonia res42: respiratory tract infection ICD-10 diagnostic
J12.1 Respiratory syncytial virus pneumonia res42: respiratory tract infection ICD-10 diagnostic
J12.2 Parainfluenza virus pneumonia res42: respiratory tract infection ICD-10 diagnostic
J12.3 Human metapneumovirus pneumonia res42: respiratory tract infection ICD-10 diagnostic
J12.8 Other viral pneumonia res42: respiratory tract infection ICD-10 diagnostic
J12.9 Viral pneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J13 Pneumonia due to Streptococcus pneumoniae res42: respiratory tract infection ICD-10 diagnostic
J14 Pneumonia due to Haemophilus influenzae res42: respiratory tract infection ICD-10 diagnostic
J15 Bacterial pneumonia, not elsewhere classified res42: respiratory tract infection ICD-10 diagnostic
J15.0 Pneumonia due to Klebsiella pneumoniae res42: respiratory tract infection ICD-10 diagnostic
J15.1 Pneumonia due to Pseudomonas res42: respiratory tract infection ICD-10 diagnostic
J15.2 Pneumonia due to staphylococcus res42: respiratory tract infection ICD-10 diagnostic
J15.3 Pneumonia due to streptococcus, group B res42: respiratory tract infection ICD-10 diagnostic
J15.4 Pneumonia due to other streptococci res42: respiratory tract infection ICD-10 diagnostic
J15.5 Pneumonia due to Escherichia coli res42: respiratory tract infection ICD-10 diagnostic
J15.6 Pneumonia due to other aerobic Gram-negative bacteria res42: respiratory tract infection ICD-10 diagnostic
J15.7 Pneumonia due to Mycoplasma pneumoniae res42: respiratory tract infection ICD-10 diagnostic
J15.8 Other bacterial pneumonia res42: respiratory tract infection ICD-10 diagnostic
J15.9 Bacterial pneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J16 Pneumonia due to other infectious organisms, not elsewhere classified res42: respiratory tract infection ICD-10 diagnostic
J16.0 Chlamydial pneumonia res42: respiratory tract infection ICD-10 diagnostic
J16.8 Pneumonia due to other specified infectious organisms res42: respiratory tract infection ICD-10 diagnostic
J17 Pneumonia in diseases classified elsewhere res42: respiratory tract infection ICD-10 diagnostic
J17.0 Pneumonia in bacterial diseases classified elsewhere res42: respiratory tract infection ICD-10 diagnostic
J17.1 Pneumonia in viral diseases classified elsewhere res42: respiratory tract infection ICD-10 diagnostic
J17.2 Pneumonia in mycoses res42: respiratory tract infection ICD-10 diagnostic
J17.3 Pneumonia in parasitic diseases res42: respiratory tract infection ICD-10 diagnostic
J17.8 Pneumonia in other diseases classified elsewhere res42: respiratory tract infection ICD-10 diagnostic
J18 Pneumonia, organism unspecified res42: respiratory tract infection ICD-10 diagnostic
J18.0 Bronchopneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J18.1 Lobar pneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J18.2 Hypostatic pneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J18.8 Other pneumonia, organism unspecified res42: respiratory tract infection ICD-10 diagnostic
J18.9 Pneumonia, unspecified res42: respiratory tract infection ICD-10 diagnostic
J20 Acute bronchitis res42: respiratory tract infection ICD-10 diagnostic
J20.0 Acute bronchitis due to Mycoplasma pneumoniae res42: respiratory tract infection ICD-10 diagnostic
J20.1 Acute bronchitis due to Haemophilus influenzae res42: respiratory tract infection ICD-10 diagnostic
J20.2 Acute bronchitis due to streptococcus res42: respiratory tract infection ICD-10 diagnostic
J20.3 Acute bronchitis due to coxsackievirus res42: respiratory tract infection ICD-10 diagnostic
J20.4 Acute bronchitis due to parainfluenza virus res42: respiratory tract infection ICD-10 diagnostic
J20.5 Acute bronchitis due to respiratory syncytial virus res42: respiratory tract infection ICD-10 diagnostic
J20.6 Acute bronchitis due to rhinovirus res42: respiratory tract infection ICD-10 diagnostic
J20.7 Acute bronchitis due to echovirus res42: respiratory tract infection ICD-10 diagnostic
J20.8 Acute bronchitis due to other specified organisms res42: respiratory tract infection ICD-10 diagnostic
J20.9 Acute bronchitis, unspecified res42: respiratory tract infection ICD-10 diagnostic
J21 Acute bronchiolitis res42: respiratory tract infection ICD-10 diagnostic
J21.0 Acute bronchiolitis due to respiratory syncytial virus res42: respiratory tract infection ICD-10 diagnostic
J21.1 Acute bronchiolitis due to human metapneumovirus res42: respiratory tract infection ICD-10 diagnostic
J21.8 Acute bronchiolitis due to other specified organisms res42: respiratory tract infection ICD-10 diagnostic
J21.9 Acute bronchiolitis, unspecified res42: respiratory tract infection ICD-10 diagnostic
J22 Unspecified acute lower respiratory infection res42: respiratory tract infection ICD-10 diagnostic
J40 Bronchitis, not specified as acute or chronic res42: respiratory tract infection ICD-10 diagnostic
J44.0 Chronic obstructive pulmonary disease with acute lower respiratory infection res42: respiratory tract infection ICD-10 diagnostic
J44.1 Chronic obstructive pulmonary disease with acute exacerbation, unspecified res42: respiratory tract infection ICD-10 diagnostic
J85 Abscess of lung and mediastinum res42: respiratory tract infection ICD-10 diagnostic
J85.0 Gangrene and necrosis of lung res42: respiratory tract infection ICD-10 diagnostic
J85.1 Abscess of lung with pneumonia res42: respiratory tract infection ICD-10 diagnostic
J85.2 Abscess of lung without pneumonia res42: respiratory tract infection ICD-10 diagnostic
J85.3 Abscess of mediastinum res42: respiratory tract infection ICD-10 diagnostic
J86 Pyothorax res42: respiratory tract infection ICD-10 diagnostic
J86.0 Pyothorax with fistula res42: respiratory tract infection ICD-10 diagnostic
J86.9 Pyothorax without fistula res42: respiratory tract infection ICD-10 diagnostic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH487/version/974/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH487/version/974/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH487', '974', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH487/version/974/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH487/version/974/export/codes/?format=json
CSV site_root/phenotypes/PH487/version/974/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH487', '974', api_client=client)

Version History

Version
ID		 Name Owner Publish date
974 Respiratory Tract Infection ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.