Data source:
We used the Clinical Practice Research Datalink (CPRD), a large primary care database that holds complete electronic patient records (including diagnoses, prescriptions and referrals) from participating family practices across the UK. A hierarchical clinical coding system (Read) is used to record the data. In July 2012, data were available for 644 practices and 13,772,992 patients. Full details of the database have been provided elsewhere.
Diabetes cohort:
We extracted data from 1 April 2006 to 31 March 2012 and, for ease of reporting and analysing, aggregated information into six financial years. Within each year, practice inclusion eligibility was determined by a CPRD assessment algorithm, which informs on practices considered to be of research standard; therefore, our cohort of practices varied over time. For each research standard practice and year, we defined as eligible patients those who were registered with the practice for the full year and were aged 18 years or over in that year. From these patients, using relevant Read codes for type 2 diabetes (e.g. C10F.00: Type 2 diabetes mellitus) and excluding those treated with insulin within 2 years of diagnosis, we identified 246,544 patients over the study period. Diagnoses were not constrained to the study period and a relevant code prior to the study as well as during the study period would flag a patient from the respective year onwards. Data on sex, age and removal from the database due to deaths were available and complete for all patients.We extracted data on diabetes-related macrovascular (myocardial infarction, stroke, peripheral vascular disease or amputation) and microvascular (retinopathy, neuropathy, nephropathy [chronic kidney disease stages 4–5] or foot ulcer) complications as well as comorbidities (asthma, coronary heart disease, chronic kidney disease [excluded from microvascular analysis], chronic obstructive pulmonary disease, depression, dementia, severe mental illness, heart failure, hypertension, stroke [excluded from macrovascular analysis], cancer, epilepsy, osteoarthritis, osteoporosis and hypothyroidism). Although we aimed to include all conditions associated with diabetes, the choice was partially determined by the domains incentivised under the Quality and Outcomes Framework (QOF), for which accuracy of diagnosis is considered high. Information was also extracted on smoking (never smoked, current, exsmoker and missing data),BMI, HbA1c levels (%), cholesterol levels (mmol/l) and systolic/diastolic BP (mmHg). Biometric measurement data were cleaned and we calculated patient means for each year when more than one relevant record was available. Using product lists we determined prescription prevalence (at least one) for relevant medications: ACE inhibitors, acarbose, α-blockers, anticoagulants, antiplatelet agents, β-blockers, calcium-channel blockers, thiazide diuretics, loop diuretics, dipeptidyl peptidase-4 inhibitors, glucagon-like peptide- 1 agonists, statins and other lipid-lowering drugs, meglitinides , metformin, sulfonylureas and thiazolidinediones. For approximately 60% of the practices, records were linked to Office of National Statistics (ONS) mortality data and we had access to death dates for all their patients. For these, using ICD-10 codes (www.who.int/classifications/icd/en/) we were able to estimate deathslinked to specific causes (underlying or in the top three): diabetes (E10–E16), ischaemic heart disease (I21–I22), stroke (I60–I64) or stroke excluding bleeds (excluding I63).
Evangelos Kontopantelis, David A Springate, David Reeves, Darren M. Aschroff, Martin Rutter, Iain Buchan, Tim Doran, Glucose, blood pressure and cholesterol levels and their relationships to clinical outcomes in type 2 diabetes: a retrospective cohort study. Diabetologia, 58:505-518, 2015.
Code | Description | Entity type | Category | Coding System (Read) |
---|---|---|---|---|
10081 | Chronic uraemia | Chronic Kidney Disease | diagnostic | Read |
10647 | Nephritis - chronic | Chronic Kidney Disease | diagnostic | Read |
10809 | Chronic membranous glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
11553 | Kidney transplant failure and rejection | Chronic Kidney Disease | diagnostic | Read |
11875 | Nephropathy - chronic | Chronic Kidney Disease | diagnostic | Read |
12479 | Chronic kidney disease stage 4 | Chronic Kidney Disease | diagnostic | Read |
12566 | Chronic kidney disease stage 3 | Chronic Kidney Disease | diagnostic | Read |
12585 | Chronic kidney disease stage 5 | Chronic Kidney Disease | diagnostic | Read |
15097 | Chronic glomerulonephritis NOS | Chronic Kidney Disease | diagnostic | Read |
17253 | Renal transplant planned | Chronic Kidney Disease | diagnostic | Read |
17365 | Nephrotic syndrome; diffuse crescentic glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
1803 | Nephrotic syndrome with membranous glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
18774 | Renal transplant with complication; without blame | Chronic Kidney Disease | diagnostic | Read |
19316 | Nephrotic syndrome; diffuse membranous glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
21158 | Chronic pyelitis | Chronic Kidney Disease | diagnostic | Read |
21947 | Nephrotic syn difus mesangial prolifertiv glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
21989 | Nephrotic syn;diffuse mesangiocapillary glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
22205 | Lupus nephritis | Chronic Kidney Disease | diagnostic | Read |
22852 | Nephrotic syndrome; focal and segmental glomerular lesions | Chronic Kidney Disease | diagnostic | Read |
23913 | Nephrotic syndrome; minor glomerular abnormality | Chronic Kidney Disease | diagnostic | Read |
2471 | Nephrotic syndrome in diabetes mellitus | Chronic Kidney Disease | diagnostic | Read |
25055 | Chronic pyonephrosis | Chronic Kidney Disease | diagnostic | Read |
26862 | Exploration of renal transplant | Chronic Kidney Disease | diagnostic | Read |
27427 | Nephrotic syndrome NOS | Chronic Kidney Disease | diagnostic | Read |
2939 | Calculous pyelonephritis | Chronic Kidney Disease | diagnostic | Read |
29634 | Nephrotic syndrome with minimal change glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
2999 | Nephrotic syndrome | Chronic Kidney Disease | diagnostic | Read |
34998 | Chronic proliferative glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
35360 | Nonobstructive reflux-associated chronic pyelonephritis | Chronic Kidney Disease | diagnostic | Read |
40349 | Lipoid nephrosis | Chronic Kidney Disease | diagnostic | Read |
45499 | Kimmelstiel - Wilson disease | Chronic Kidney Disease | diagnostic | Read |
4654 | Chronic pyelonephritis | Chronic Kidney Disease | diagnostic | Read |
4669 | Chronic focal glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
47672 | Nephrotic syndrome in systemic lupus erythematosus | Chronic Kidney Disease | diagnostic | Read |
47922 | Nephrotic syndrome in amyloidosis | Chronic Kidney Disease | diagnostic | Read |
48111 | Chronic pyelonephritis NOS | Chronic Kidney Disease | diagnostic | Read |
48855 | Chronic obstructive pyelonephritis | Chronic Kidney Disease | diagnostic | Read |
50472 | Nephrotic syn;difus endocapilary proliftv glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
512 | Chronic renal failure | Chronic Kidney Disease | diagnostic | Read |
53852 | End stage renal failure | Chronic Kidney Disease | diagnostic | Read |
54990 | Kidney transplant with complication; without blame | Chronic Kidney Disease | diagnostic | Read |
56987 | Nephrotic syndrome; dense deposit disease | Chronic Kidney Disease | diagnostic | Read |
57568 | Chronic pyelonephritis with medullary necrosis | Chronic Kidney Disease | diagnostic | Read |
57926 | Steroid sensitive nephrotic syndrome | Chronic Kidney Disease | diagnostic | Read |
58750 | Nephrotic syndrome in polyarteritis nodosa | Chronic Kidney Disease | diagnostic | Read |
5911 | [V]Kidney transplanted | Chronic Kidney Disease | diagnostic | Read |
60960 | Other chronic glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
61494 | Chronic membranoproliferative glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
63615 | Other chronic glomerulonephritis NOS | Chronic Kidney Disease | diagnostic | Read |
63786 | Congenital nephrotic syndrome | Chronic Kidney Disease | diagnostic | Read |
65064 | Chronic rapidly progressive glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
65400 | Chronic diffuse glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
6712 | End stage renal failure | Chronic Kidney Disease | diagnostic | Read |
72303 | Finnish nephrosis syndrome | Chronic Kidney Disease | diagnostic | Read |
7804 | Chronic glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
8330 | End-stage renal disease | Chronic Kidney Disease | diagnostic | Read |
94373 | Nephrotic syndrome with other pathological kidney lesions | Chronic Kidney Disease | diagnostic | Read |
94793 | Chronic kidney disease stage 3 with proteinuria | Chronic Kidney Disease | diagnostic | Read |
94965 | Chronic kidney disease stage 3A | Chronic Kidney Disease | diagnostic | Read |
95122 | Chronic kidney disease stage 4 with proteinuria | Chronic Kidney Disease | diagnostic | Read |
95123 | Chronic kidney disease stage 3 without proteinuria | Chronic Kidney Disease | diagnostic | Read |
95175 | Chronic kidney disease stage 3A without proteinuria | Chronic Kidney Disease | diagnostic | Read |
95177 | Chronic kidney disease stage 3B without proteinuria | Chronic Kidney Disease | diagnostic | Read |
95178 | Chronic kidney disease stage 3B with proteinuria | Chronic Kidney Disease | diagnostic | Read |
95179 | Chronic kidney disease stage 3B | Chronic Kidney Disease | diagnostic | Read |
95405 | Chronic kidney disease stage 5 without proteinuria | Chronic Kidney Disease | diagnostic | Read |
95406 | Chronic kidney disease stage 4 without proteinuria | Chronic Kidney Disease | diagnostic | Read |
95408 | Chronic kidney disease stage 3A with proteinuria | Chronic Kidney Disease | diagnostic | Read |
95508 | Chronic kidney disease stage 5 with proteinuria | Chronic Kidney Disease | diagnostic | Read |
97758 | Chronic glomerulonephritis + diseases EC | Chronic Kidney Disease | diagnostic | Read |
9840 | Nephrotic syndrome with proliferative glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
99201 | Nephrotic syndrome in malaria | Chronic Kidney Disease | diagnostic | Read |
99631 | Chronic pyelonephritis without medullary necrosis | Chronic Kidney Disease | diagnostic | Read |
99644 | Nephrotic syndrome+membranoproliferative glomerulonephritis | Chronic Kidney Disease | diagnostic | Read |
To Export Phenotype Details:
Format | API |
---|---|
XML | site_root/api/v1/public/phenotypes/PH509/version/1018/detail/?format=xml |
JSON | site_root/api/v1/public/phenotypes/PH509/version/1018/detail/?format=json |
R Package |
|
To Export Phenotype Code List:
Format | API |
---|---|
XML | site_root/api/v1/public/phenotypes/PH509/version/1018/export/codes/?format=xml |
JSON | site_root/api/v1/public/phenotypes/PH509/version/1018/export/codes/?format=json |
CSV | site_root/phenotypes/PH509/version/1018/export/codes/ |
R Package |
|
Version ID |
Name | Owner | Publish date | |
---|---|---|---|---|
1018 | Chronic Kidney Disease | ieuan.scanlon | 2021-10-06 | currently shown |
Export - export all codes into a csv file/JSON/XML for the current phenotype version.
Print - Print page.