Raised Total Cholesterol
Kuan V,Denaxas S,Gonzalez-Izquierdo A,Direk K,Bhatti O,Husain S,Sutaria S,Hingorani M,Nitsch D,Parisinos C,Lumbers T,Mathur R,Sofat R,Casas JP,Wong I,Hemingway H,Hingorani A
PH51 / 1529 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemNo dataData SourcesCollectionsPhenotype LibraryTagsNo dataDefinition
At the specified date, a patient is defined as having had 'Raised Total Cholesterol' IF they meet the criteria for any of the following on or before the specified date.
Primary care 1. IF the highest value EVER recorded for Total Cholesterol for a patient on or before the specified date is greater than: a) serum: 5 mmol/L OR b) serum: 193.35 mg/dL OR c) plasma: 4.8544 mmol/L OR d) plasma: 187.7184 mg/dL
Implementation
Implementation
Clinical Code List
No Clinical Code ListsPublication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V,Denaxas S,Gonzalez-Izquierdo A,Direk K,Bhatti O,Husain S,Sutaria S,Hingorani M,Nitsch D,Parisinos C,Lumbers T,Mathur R,Sofat R,Casas JP,Wong I,Hemingway H,Hingorani A. PH51 / 1529 - Raised Total Cholesterol. Phenotype Library [Online]. 27 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH51/version/1529/detail/. [Accessed 30 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH51/version/1529/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH51',
version_id=1529
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH51',
version_id=1529
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH51/version/1529/export/codes/?format=json CSV site_root/phenotypes/PH51/version/1529/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH51',
version_id=1529
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH51',
version_id=1529
)Version History