Phenotype Library | phenotype: Irritable bowel syndrome

Irritable bowel syndrome

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH53

Version ID

106

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Irritable bowel syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Irritable bowel syndrome' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

ALL diagnoses of 'Irritable bowel syndrome' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/157

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C828/2795 Irritable bowel syndrome - Primary care - Read codes v2

Rows: 6

Code	Description	Disease	Medcode	Category
14CF.00	History of irritable bowel syndrome	Irritable bowel syndrome	30630.0	History of Irritable bowel syndrome
8Cm..00	Management of irritable bowel syndrome	Irritable bowel syndrome	104591.0	Diagnosis of Irritable bowel syndrome
J521.00	Irritable colon - Irritable bowel syndrome	Irritable bowel syndrome	923.0	Diagnosis of Irritable bowel syndrome
J521.11	Irritable bowel syndrome	Irritable bowel syndrome	451.0	Diagnosis of Irritable bowel syndrome
J521.13	Spastic colon	Irritable bowel syndrome	2153.0	Diagnosis of Irritable bowel syndrome
J521000	Irritable bowel syndrome with diarrhoea	Irritable bowel syndrome	29835.0	Diagnosis of Irritable bowel syndrome

C829/2797 Irritable bowel syndrome - Primary care - Med codes

Rows: 6

Code	Description	Disease	ReadcodeDescr	Readcode
104591.0	Diagnosis of Irritable bowel syndrome	Irritable bowel syndrome	Management of irritable bowel syndrome	8Cm..00
2153.0	Diagnosis of Irritable bowel syndrome	Irritable bowel syndrome	Spastic colon	J521.13
29835.0	Diagnosis of Irritable bowel syndrome	Irritable bowel syndrome	Irritable bowel syndrome with diarrhoea	J521000
30630.0	History of Irritable bowel syndrome	Irritable bowel syndrome	History of irritable bowel syndrome	14CF.00
451.0	Diagnosis of Irritable bowel syndrome	Irritable bowel syndrome	Irritable bowel syndrome	J521.11
923.0	Diagnosis of Irritable bowel syndrome	Irritable bowel syndrome	Irritable colon - Irritable bowel syndrome	J521.00

C830/2799 Irritable bowel syndrome - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
K58	Irritable bowel syndrome	Irritable bowel syndrome	Diagnosis of Irritable bowel syndrome

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH53/version/106/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH53/version/106/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH53', '106', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH53/version/106/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH53/version/106/export/codes/?format=json
CSV	site_root/phenotypes/PH53/version/106/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH53', '106', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
106	Irritable bowel syndrome	ieuan.scanlon	2021-10-06	currently shown