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Irritable bowel syndrome

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH53
Version ID
106
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Irritable bowel syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Irritable bowel syndrome' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Irritable bowel syndrome' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 6
Code Description Disease Medcode Category
14CF.00 History of irritable bowel syndrome Irritable bowel syndrome 30630.0 History of Irritable bowel syndrome
8Cm..00 Management of irritable bowel syndrome Irritable bowel syndrome 104591.0 Diagnosis of Irritable bowel syndrome
J521.00 Irritable colon - Irritable bowel syndrome Irritable bowel syndrome 923.0 Diagnosis of Irritable bowel syndrome
J521.11 Irritable bowel syndrome Irritable bowel syndrome 451.0 Diagnosis of Irritable bowel syndrome
J521.13 Spastic colon Irritable bowel syndrome 2153.0 Diagnosis of Irritable bowel syndrome
J521000 Irritable bowel syndrome with diarrhoea Irritable bowel syndrome 29835.0 Diagnosis of Irritable bowel syndrome
Rows: 6
Code Description Disease ReadcodeDescr Readcode
104591.0 Diagnosis of Irritable bowel syndrome Irritable bowel syndrome Management of irritable bowel syndrome 8Cm..00
2153.0 Diagnosis of Irritable bowel syndrome Irritable bowel syndrome Spastic colon J521.13
29835.0 Diagnosis of Irritable bowel syndrome Irritable bowel syndrome Irritable bowel syndrome with diarrhoea J521000
30630.0 History of Irritable bowel syndrome Irritable bowel syndrome History of irritable bowel syndrome 14CF.00
451.0 Diagnosis of Irritable bowel syndrome Irritable bowel syndrome Irritable bowel syndrome J521.11
923.0 Diagnosis of Irritable bowel syndrome Irritable bowel syndrome Irritable colon - Irritable bowel syndrome J521.00
Rows: 1
Code Description Disease Category
K58 Irritable bowel syndrome Irritable bowel syndrome Diagnosis of Irritable bowel syndrome

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH53/version/106/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH53/version/106/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH53', '106', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH53/version/106/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH53/version/106/export/codes/?format=json
CSV site_root/phenotypes/PH53/version/106/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH53', '106', api_client=client)

Version History

Version
ID
Name Owner Publish date
106 Irritable bowel syndrome ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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