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Serious Mental Illness (SMI)

Evangelos Kontopantelis, Ivan Olier, Claire Planner, David Reeves, Darren M Ashcroft, Linda Gask, Tim Doran, Sioban Reilly

Type
Disease or Syndrome
ID
PH558
Version ID
1116
Data Sources
Valid event data range
01/04/2000 - 31/03/2012
Sex
Female, Male
Agreement Date
2015-12-16
Coding system
Read codes v2
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

The database:

The CPRD is a large computerised database of anonymised primary care medical records. It contains complete patient information for participating practices, with the healthcare events (diagnoses, treatments, referrals, tests and prescriptions) recorded using coding systems (Read coding for diagnoses). Practice characteristics are described in detail elsewhere. The database is broadly representative of the UK population, although larger practices are over-represented. Practices need to meet prespecified data entry quality criteria to be defined as ‘up to research standard’, and for each study year, our main sample included all CPRD practices that were classed as such for the whole year. We also generated two data sets to test the sensitivity of our findings. First, we included all practices contributing data across the entire study period. Second, we included a subsample of 50 practices, representative of UK practices in terms of area deprivation, and practice list size.

Defining people with SMI and controls:

Information was extracted for the period 1 April 2000 to 31 March 2012 and aggregated into 12 yearly ‘bins’, to correspond with financial years 2000/2001–2011/2012. We used Read codes to identify the presence of SMI. First, we identified relevant keywords (or key-stubs) and codes, for example ‘paranoi’ and ‘E100.00’ (simple schizophrenia). Next, the CPRD was searched for codes that matched the list in either the code or the description field. Finally, the matched code list was reviewed by clinical experts and a final conservative list of codes was agreed. A similar process was used to define comorbidities (hypertension, asthma, hypothyroidism, osteoarthritis, chronic kidney disease, coronary heart disease, epilepsy, chronic obstructive pulmonary disease, cancer, stroke, heart failure, rheumatoid arthritis, dementia and psoriasis). All code lists we used are available from http://www.clinicalcodes.org. All conditions, bar asthma, were treated as unresolvable (ie, permanent). Within each year, all patients registered with a CPRD practice for the whole year and aged 18 or over were eligible for inclusion. The final SMI Read code list was used to identify cases of SMI, which were then grouped into three broad subcategories, in line with the diagnoses used when compiling primary care QOF SMI registers: schizophrenia; affective psychoses (bipolar disorder or other unspecified affective psychosis); other types of psychosis. In the event that an individual received more than one SMI diagnosis over the study period, we used the last available diagnosis to retrospectively ‘correct’ the original diagnosis (ie, we assumed that the latest diagnosis was the correct one). Within each year, each SMI case was then matched on age, sex and practice to five randomly selected patients not associated with SMI up until that time point. More details on the extraction of the cohort have been provided elsewhere,21 and a flow chart of the data extraction process is available in the online appendix figure A2.

Defining consultation type:

We defined a ‘consultation’ as involving direct contact between a patient and a healthcare professional within the primary care setting. We divided consultations into two main categories: face-to-face (our primary outcome), and by telephone (see online appendix table A1). We also constructed a third ‘other’ grouping of all other activities that are captured by the ‘consultation type’ codes within the CPRD. This includes mail/email contact, third party consultations (including referrals), secondary care episodes, other administrative tasks and consultations of unknown content. This group is highly heterogeneous and includes many activities that cannot be classed as consultations. However, we decided to use this grouping as an aggregate secondary outcome since it can potentially provide insight into the overall workload associated with patient care in the primary care context. We decided against breaking down the ‘other’ group in more subcategories as we are very doubtful regarding the reliability and across practice consistency of the coding within these ‘other’ categories. In instances where a patient had two or more consultations within a day, we conservatively assumed a single consultation took place, to reduce the likelihood of including duplicate records.

Publications

  • Evangelos Kontopantelis, Ivan Olier, Claire Panner, David Reeves, Darren M Ashcroft, Linda Gask, Tim Doran, Siobhan Reilly, Primary care consultation rates among people with and without severe mental illness a UK cohort study using the Clinical Practice Research Datalink. BMJ Open, 5 (e008650), 2015.

Clinical Code List

Rows: 268
Code Description Entity type Category Coding System (Read)
E100.00 Simple schizophrenia res21: SMI diagnostic Read
E100.11 Schizophrenia simplex res21: SMI diagnostic Read
E100000 Unspecified schizophrenia res21: SMI diagnostic Read
E100100 Subchronic schizophrenia res21: SMI diagnostic Read
E100200 Chronic schizophrenic res21: SMI diagnostic Read
E100300 Acute exacerbation of subchronic schizophrenia res21: SMI diagnostic Read
E100400 Acute exacerbation of chronic schizophrenia res21: SMI diagnostic Read
E100500 Schizophrenia in remission res21: SMI diagnostic Read
E100z00 Simple schizophrenia NOS res21: SMI diagnostic Read
E101.00 Hebephrenic schizophrenia res21: SMI diagnostic Read
E101000 Unspecified hebephrenic schizophrenia res21: SMI diagnostic Read
E101400 Acute exacerbation of chronic hebephrenic schizophrenia res21: SMI diagnostic Read
E101500 Hebephrenic schizophrenia in remission res21: SMI diagnostic Read
E101z00 Hebephrenic schizophrenia NOS res21: SMI diagnostic Read
E102.00 Catatonic schizophrenia res21: SMI diagnostic Read
E102000 Unspecified catatonic schizophrenia res21: SMI diagnostic Read
E102100 Subchronic catatonic schizophrenia res21: SMI diagnostic Read
E102500 Catatonic schizophrenia in remission res21: SMI diagnostic Read
E102z00 Catatonic schizophrenia NOS res21: SMI diagnostic Read
E103.00 Paranoid schizophrenia res21: SMI diagnostic Read
E103000 Unspecified paranoid schizophrenia res21: SMI diagnostic Read
E103200 Chronic paranoid schizophrenia res21: SMI diagnostic Read
E103300 Acute exacerbation of subchronic paranoid schizophrenia res21: SMI diagnostic Read
E103400 Acute exacerbation of chronic paranoid schizophrenia res21: SMI diagnostic Read
E103500 Paranoid schizophrenia in remission res21: SMI diagnostic Read
E103z00 Paranoid schizophrenia NOS res21: SMI diagnostic Read
E104.00 Acute schizophrenic episode res21: SMI diagnostic Read
E105.00 Latent schizophrenia res21: SMI diagnostic Read
E105000 Unspecified latent schizophrenia res21: SMI diagnostic Read
E105200 Chronic latent schizophrenia res21: SMI diagnostic Read
E105500 Latent schizophrenia in remission res21: SMI diagnostic Read
E105z00 Latent schizophrenia NOS res21: SMI diagnostic Read
E106.00 Residual schizophrenia res21: SMI diagnostic Read
E107.00 Schizo-affective schizophrenia res21: SMI diagnostic Read
E107.11 Cyclic schizophrenia res21: SMI diagnostic Read
E107000 Unspecified schizo-affective schizophrenia res21: SMI diagnostic Read
E107100 Subchronic schizo-affective schizophrenia res21: SMI diagnostic Read
E107200 Chronic schizo-affective schizophrenia res21: SMI diagnostic Read
E107300 Acute exacerbation subchronic schizo-affective schizophrenia res21: SMI diagnostic Read
E107400 Acute exacerbation of chronic schizo-affective schizophrenia res21: SMI diagnostic Read
E107500 Schizo-affective schizophrenia in remission res21: SMI diagnostic Read
E107z00 Schizo-affective schizophrenia NOS res21: SMI diagnostic Read
E10y.00 Other schizophrenia res21: SMI diagnostic Read
E10y.11 Cenesthopathic schizophrenia res21: SMI diagnostic Read
E10y000 Atypical schizophrenia res21: SMI diagnostic Read
E10y100 Coenesthopathic schizophrenia res21: SMI diagnostic Read
E10yz00 Other schizophrenia NOS res21: SMI diagnostic Read
E10z.00 Schizophrenia NOS res21: SMI diagnostic Read
E11..00 Affective psychoses res21: SMI diagnostic Read
E11..12 Depressive psychoses res21: SMI diagnostic Read
E110.00 Manic disorder, single episode res21: SMI diagnostic Read
E110.11 Hypomanic psychoses res21: SMI diagnostic Read
E110000 Single manic episode, unspecified res21: SMI diagnostic Read
E110100 Single manic episode, mild res21: SMI diagnostic Read
E110200 Single manic episode, moderate res21: SMI diagnostic Read
E110300 Single manic episode, severe without mention of psychosis res21: SMI diagnostic Read
E110400 Single manic episode, severe, with psychosis res21: SMI diagnostic Read
E110600 Single manic episode in full remission res21: SMI diagnostic Read
E110z00 Manic disorder, single episode NOS res21: SMI diagnostic Read
E111.00 Recurrent manic episodes res21: SMI diagnostic Read
E111000 Recurrent manic episodes, unspecified res21: SMI diagnostic Read
E111100 Recurrent manic episodes, mild res21: SMI diagnostic Read
E111200 Recurrent manic episodes, moderate res21: SMI diagnostic Read
E111300 Recurrent manic episodes, severe without mention psychosis res21: SMI diagnostic Read
E111400 Recurrent manic episodes, severe, with psychosis res21: SMI diagnostic Read
E111500 Recurrent manic episodes, partial or unspecified remission res21: SMI diagnostic Read
E111600 Recurrent manic episodes, in full remission res21: SMI diagnostic Read
E111z00 Recurrent manic episode NOS res21: SMI diagnostic Read
E112400 Single major depressive episode, severe, with psychosis res21: SMI diagnostic Read
E113400 Recurrent major depressive episodes, severe, with psychosis res21: SMI diagnostic Read
E114.00 Bipolar affective disorder, currently manic res21: SMI diagnostic Read
E114.11 Manic-depressive - now manic res21: SMI diagnostic Read
E114000 Bipolar affective disorder, currently manic, unspecified res21: SMI diagnostic Read
E114100 Bipolar affective disorder, currently manic, mild res21: SMI diagnostic Read
E114200 Bipolar affective disorder, currently manic, moderate res21: SMI diagnostic Read
E114300 Bipolar affect disord, currently manic, severe, no psychosis res21: SMI diagnostic Read
E114400 Bipolar affect disord, currently manic,severe with psychosis res21: SMI diagnostic Read
E114500 Bipolar affect disord,currently manic, part/unspec remission res21: SMI diagnostic Read
E114600 Bipolar affective disorder, currently manic, full remission res21: SMI diagnostic Read
E114z00 Bipolar affective disorder, currently manic, NOS res21: SMI diagnostic Read
E115.00 Bipolar affective disorder, currently depressed res21: SMI diagnostic Read
E115.11 Manic-depressive - now depressed res21: SMI diagnostic Read
E115000 Bipolar affective disorder, currently depressed, unspecified res21: SMI diagnostic Read
E115100 Bipolar affective disorder, currently depressed, mild res21: SMI diagnostic Read
E115200 Bipolar affective disorder, currently depressed, moderate res21: SMI diagnostic Read
E115300 Bipolar affect disord, now depressed, severe, no psychosis res21: SMI diagnostic Read
E115400 Bipolar affect disord, now depressed, severe with psychosis res21: SMI diagnostic Read
E115500 Bipolar affect disord, now depressed, part/unspec remission res21: SMI diagnostic Read
E115600 Bipolar affective disorder, now depressed, in full remission res21: SMI diagnostic Read
E115z00 Bipolar affective disorder, currently depressed, NOS res21: SMI diagnostic Read
E116.00 Mixed bipolar affective disorder res21: SMI diagnostic Read
E116000 Mixed bipolar affective disorder, unspecified res21: SMI diagnostic Read
E116100 Mixed bipolar affective disorder, mild res21: SMI diagnostic Read
E116200 Mixed bipolar affective disorder, moderate res21: SMI diagnostic Read
E116300 Mixed bipolar affective disorder, severe, without psychosis res21: SMI diagnostic Read
E116400 Mixed bipolar affective disorder, severe, with psychosis res21: SMI diagnostic Read
E116500 Mixed bipolar affective disorder, partial/unspec remission res21: SMI diagnostic Read
E116600 Mixed bipolar affective disorder, in full remission res21: SMI diagnostic Read
E116z00 Mixed bipolar affective disorder, NOS res21: SMI diagnostic Read
E117.00 Unspecified bipolar affective disorder res21: SMI diagnostic Read
E117000 Unspecified bipolar affective disorder, unspecified res21: SMI diagnostic Read
E117100 Unspecified bipolar affective disorder, mild res21: SMI diagnostic Read
E117200 Unspecified bipolar affective disorder, moderate res21: SMI diagnostic Read
E117300 Unspecified bipolar affective disorder, severe, no psychosis res21: SMI diagnostic Read
E117400 Unspecified bipolar affective disorder,severe with psychosis res21: SMI diagnostic Read
E117500 Unspecified bipolar affect disord, partial/unspec remission res21: SMI diagnostic Read
E117600 Unspecified bipolar affective disorder, in full remission res21: SMI diagnostic Read
E117z00 Unspecified bipolar affective disorder, NOS res21: SMI diagnostic Read
E11y.00 Other and unspecified manic-depressive psychoses res21: SMI diagnostic Read
E11y000 Unspecified manic-depressive psychoses res21: SMI diagnostic Read
E11y100 Atypical manic disorder res21: SMI diagnostic Read
E11y300 Other mixed manic-depressive psychoses res21: SMI diagnostic Read
E11yz00 Other and unspecified manic-depressive psychoses NOS res21: SMI diagnostic Read
E11z.00 Other and unspecified affective psychoses res21: SMI diagnostic Read
E11z000 Unspecified affective psychoses NOS res21: SMI diagnostic Read
E11zz00 Other affective psychosis NOS res21: SMI diagnostic Read
E120.00 Simple paranoid state res21: SMI diagnostic Read
E121.00 Chronic paranoid psychosis res21: SMI diagnostic Read
E122.00 Paraphrenia res21: SMI diagnostic Read
E123.00 Shared paranoid disorder res21: SMI diagnostic Read
E123.11 Folie a deux res21: SMI diagnostic Read
E12y.00 Other paranoid states res21: SMI diagnostic Read
E12y000 Paranoia querulans res21: SMI diagnostic Read
E12yz00 Other paranoid states NOS res21: SMI diagnostic Read
E12z.00 Paranoid psychosis NOS res21: SMI diagnostic Read
E13..00 Other nonorganic psychoses res21: SMI diagnostic Read
E13..11 Reactive psychoses res21: SMI diagnostic Read
E130.00 Reactive depressive psychosis res21: SMI diagnostic Read
E130.11 Psychotic reactive depression res21: SMI diagnostic Read
E131.00 Acute hysterical psychosis res21: SMI diagnostic Read
E132.00 Reactive confusion res21: SMI diagnostic Read
E133.00 Acute paranoid reaction res21: SMI diagnostic Read
E133.11 Bouffee delirante res21: SMI diagnostic Read
E134.00 Psychogenic paranoid psychosis res21: SMI diagnostic Read
E13y.00 Other reactive psychoses res21: SMI diagnostic Read
E13y000 Psychogenic stupor res21: SMI diagnostic Read
E13y100 Brief reactive psychosis res21: SMI diagnostic Read
E13yz00 Other reactive psychoses NOS res21: SMI diagnostic Read
E13z.00 Nonorganic psychosis NOS res21: SMI diagnostic Read
E13z.11 Psychotic episode NOS res21: SMI diagnostic Read
E1z..00 Non-organic psychosis NOS res21: SMI diagnostic Read
E212200 Schizotypal personality res21: SMI diagnostic Read
Eu20.00 [X]Schizophrenia res21: SMI diagnostic Read
Eu20000 [X]Paranoid schizophrenia res21: SMI diagnostic Read
Eu20011 [X]Paraphrenic schizophrenia res21: SMI diagnostic Read
Eu20100 [X]Hebephrenic schizophrenia res21: SMI diagnostic Read
Eu20111 [X]Disorganised schizophrenia res21: SMI diagnostic Read
Eu20200 [X]Catatonic schizophrenia res21: SMI diagnostic Read
Eu20211 [X]Catatonic stupor res21: SMI diagnostic Read
Eu20212 [X]Schizophrenic catalepsy res21: SMI diagnostic Read
Eu20213 [X]Schizophrenic catatonia res21: SMI diagnostic Read
Eu20214 [X]Schizophrenic flexibilatis cerea res21: SMI diagnostic Read
Eu20300 [X]Undifferentiated schizophrenia res21: SMI diagnostic Read
Eu20311 [X]Atypical schizophrenia res21: SMI diagnostic Read
Eu20400 [X]Post-schizophrenic depression res21: SMI diagnostic Read
Eu20500 [X]Residual schizophrenia res21: SMI diagnostic Read
Eu20511 [X]Chronic undifferentiated schizophrenia res21: SMI diagnostic Read
Eu20600 [X]Simple schizophrenia res21: SMI diagnostic Read
Eu20y00 [X]Other schizophrenia res21: SMI diagnostic Read
Eu20y12 [X]Schizophreniform disord NOS res21: SMI diagnostic Read
Eu20y13 [X]Schizophrenifrm psychos NOS res21: SMI diagnostic Read
Eu20z00 [X]Schizophrenia, unspecified res21: SMI diagnostic Read
Eu21.00 [X]Schizotypal disorder res21: SMI diagnostic Read
Eu21.11 [X]Latent schizophrenic reaction res21: SMI diagnostic Read
Eu21.12 [X]Borderline schizophrenia res21: SMI diagnostic Read
Eu21.13 [X]Latent schizophrenia res21: SMI diagnostic Read
Eu21.14 [X]Prepsychotic schizophrenia res21: SMI diagnostic Read
Eu21.15 [X]Prodromal schizophrenia res21: SMI diagnostic Read
Eu21.16 [X]Pseudoneurotic schizophrenia res21: SMI diagnostic Read
Eu21.17 [X]Pseudopsychopathic schizophrenia res21: SMI diagnostic Read
Eu21.18 [X]Schizotypal personality disorder res21: SMI diagnostic Read
Eu22.00 [X]Persistent delusional disorders res21: SMI diagnostic Read
Eu22000 [X]Delusional disorder res21: SMI diagnostic Read
Eu22011 [X]Paranoid psychosis res21: SMI diagnostic Read
Eu22012 [X]Paranoid state res21: SMI diagnostic Read
Eu22013 [X]Paraphrenia - late res21: SMI diagnostic Read
Eu22014 [X]Sensitiver Beziehungswahn res21: SMI diagnostic Read
Eu22015 [X]Paranoia res21: SMI diagnostic Read
Eu22100 [X]Delusional misidentification syndrome res21: SMI diagnostic Read
Eu22111 [X]Capgras syndrome res21: SMI diagnostic Read
Eu22200 [X]Cotard syndrome res21: SMI diagnostic Read
Eu22300 [X]Paranoid state in remission res21: SMI diagnostic Read
Eu22y00 [X]Other persistent delusional disorders res21: SMI diagnostic Read
Eu22y11 [X]Delusional dysmorphophobia res21: SMI diagnostic Read
Eu22y12 [X]Involutional paranoid state res21: SMI diagnostic Read
Eu22y13 [X]Paranoia querulans res21: SMI diagnostic Read
Eu22z00 [X]Persistent delusional disorder, unspecified res21: SMI diagnostic Read
Eu23.00 [X]Acute and transient psychotic disorders res21: SMI diagnostic Read
Eu23000 [X]Acute polymorphic psychot disord without symp of schizoph res21: SMI diagnostic Read
Eu23011 [X]Bouffee delirante res21: SMI diagnostic Read
Eu23012 [X]Cycloid psychosis res21: SMI diagnostic Read
Eu23100 [X]Acute polymorphic psychot disord with symp of schizophren res21: SMI diagnostic Read
Eu23112 [X]Cycloid psychosis with symptoms of schizophrenia res21: SMI diagnostic Read
Eu23200 [X]Acute schizophrenia-like psychotic disorder res21: SMI diagnostic Read
Eu23211 [X]Brief schizophreniform disorder res21: SMI diagnostic Read
Eu23212 [X]Brief schizophrenifrm psych res21: SMI diagnostic Read
Eu23214 [X]Schizophrenic reaction res21: SMI diagnostic Read
Eu23300 [X]Other acute predominantly delusional psychotic disorders res21: SMI diagnostic Read
Eu23312 [X]Psychogenic paranoid psychosis res21: SMI diagnostic Read
Eu23y00 [X]Other acute and transient psychotic disorders res21: SMI diagnostic Read
Eu23z00 [X]Acute and transient psychotic disorder, unspecified res21: SMI diagnostic Read
Eu23z11 [X]Brief reactive psychosis NOS res21: SMI diagnostic Read
Eu23z12 [X]Reactive psychosis res21: SMI diagnostic Read
Eu24.00 [X]Induced delusional disorder res21: SMI diagnostic Read
Eu24.12 [X]Induced paranoid disorder res21: SMI diagnostic Read
Eu24.13 [X]Induced psychotic disorder res21: SMI diagnostic Read
Eu25.00 [X]Schizoaffective disorders res21: SMI diagnostic Read
Eu25000 [X]Schizoaffective disorder, manic type res21: SMI diagnostic Read
Eu25011 [X]Schizoaffective psychosis, manic type res21: SMI diagnostic Read
Eu25012 [X]Schizophreniform psychosis, manic type res21: SMI diagnostic Read
Eu25100 [X]Schizoaffective disorder, depressive type res21: SMI diagnostic Read
Eu25111 [X]Schizoaffective psychosis, depressive type res21: SMI diagnostic Read
Eu25112 [X]Schizophreniform psychosis, depressive type res21: SMI diagnostic Read
Eu25200 [X]Schizoaffective disorder, mixed type res21: SMI diagnostic Read
Eu25212 [X]Mixed schizophrenic and affective psychosis res21: SMI diagnostic Read
Eu25y00 [X]Other schizoaffective disorders res21: SMI diagnostic Read
Eu25z00 [X]Schizoaffective disorder, unspecified res21: SMI diagnostic Read
Eu25z11 [X]Schizoaffective psychosis NOS res21: SMI diagnostic Read
Eu26.00 [X]Nonorganic psychosis in remission res21: SMI diagnostic Read
Eu2y.00 [X]Other nonorganic psychotic disorders res21: SMI diagnostic Read
Eu2y.11 [X]Chronic hallucinatory psychosis res21: SMI diagnostic Read
Eu2z.00 [X]Unspecified nonorganic psychosis res21: SMI diagnostic Read
Eu2z.11 [X]Psychosis NOS res21: SMI diagnostic Read
Eu30.00 [X]Manic episode res21: SMI diagnostic Read
Eu30.11 [X]Bipolar disorder, single manic episode res21: SMI diagnostic Read
Eu30000 [X]Hypomania res21: SMI diagnostic Read
Eu30100 [X]Mania without psychotic symptoms res21: SMI diagnostic Read
Eu30200 [X]Mania with psychotic symptoms res21: SMI diagnostic Read
Eu30211 [X]Mania with mood-congruent psychotic symptoms res21: SMI diagnostic Read
Eu30212 [X]Mania with mood-incongruent psychotic symptoms res21: SMI diagnostic Read
Eu30y00 [X]Other manic episodes res21: SMI diagnostic Read
Eu30z00 [X]Manic episode, unspecified res21: SMI diagnostic Read
Eu30z11 [X]Mania NOS res21: SMI diagnostic Read
Eu31.00 [X]Bipolar affective disorder res21: SMI diagnostic Read
Eu31.11 [X]Manic-depressive illness res21: SMI diagnostic Read
Eu31.12 [X]Manic-depressive psychosis res21: SMI diagnostic Read
Eu31.13 [X]Manic-depressive reaction res21: SMI diagnostic Read
Eu31000 [X]Bipolar affective disorder, current episode hypomanic res21: SMI diagnostic Read
Eu31100 [X]Bipolar affect disorder cur epi manic wout psychotic symp res21: SMI diagnostic Read
Eu31200 [X]Bipolar affect disorder cur epi manic with psychotic symp res21: SMI diagnostic Read
Eu31300 [X]Bipolar affect disorder cur epi mild or moderate depressn res21: SMI diagnostic Read
Eu31400 [X]Bipol aff disord, curr epis sev depress, no psychot symp res21: SMI diagnostic Read
Eu31500 [X]Bipolar affect dis cur epi severe depres with psyc symp res21: SMI diagnostic Read
Eu31600 [X]Bipolar affective disorder, current episode mixed res21: SMI diagnostic Read
Eu31700 [X]Bipolar affective disorder, currently in remission res21: SMI diagnostic Read
Eu31800 res21: SMI diagnostic Read
Eu31900 res21: SMI diagnostic Read
Eu31911 res21: SMI diagnostic Read
Eu31y00 [X]Other bipolar affective disorders res21: SMI diagnostic Read
Eu31y11 [X]Bipolar II disorder res21: SMI diagnostic Read
Eu31y12 [X]Recurrent manic episodes res21: SMI diagnostic Read
Eu31z00 [X]Bipolar affective disorder, unspecified res21: SMI diagnostic Read
Eu32300 [X]Severe depressive episode with psychotic symptoms res21: SMI diagnostic Read
Eu32311 [X]Single episode of major depression and psychotic symptoms res21: SMI diagnostic Read
Eu32312 [X]Single episode of psychogenic depressive psychosis res21: SMI diagnostic Read
Eu32313 [X]Single episode of psychotic depression res21: SMI diagnostic Read
Eu32314 [X]Single episode of reactive depressive psychosis res21: SMI diagnostic Read
Eu32800 [X]Major depression, severe with psychotic symptoms res21: SMI diagnostic Read
Eu33213 [X]Manic-depress psychosis,depressd,no psychotic symptoms res21: SMI diagnostic Read
Eu33300 [X]Recurrent depress disorder cur epi severe with psyc symp res21: SMI diagnostic Read
Eu33311 [X]Endogenous depression with psychotic symptoms res21: SMI diagnostic Read
Eu33312 [X]Manic-depress psychosis,depressed type+psychotic symptoms res21: SMI diagnostic Read
Eu33313 [X]Recurr severe episodes/major depression+psychotic symptom res21: SMI diagnostic Read
Eu33314 [X]Recurr severe episodes/psychogenic depressive psychosis res21: SMI diagnostic Read
Eu33315 [X]Recurrent severe episodes of psychotic depression res21: SMI diagnostic Read
Eu33316 [X]Recurrent severe episodes/reactive depressive psychosis res21: SMI diagnostic Read
Eu3z.11 [X]Affective psychosis NOS res21: SMI diagnostic Read
Eu44.14 [X]Hysterical psychosis res21: SMI diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH558/version/1116/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH558/version/1116/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH558', '1116', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH558/version/1116/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH558/version/1116/export/codes/?format=json
CSV site_root/phenotypes/PH558/version/1116/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH558', '1116', api_client=client)

Version History

Version
ID
Name Owner Publish date
1116 Serious Mental Illness (SMI) ieuan.scanlon 2021-10-06 currently shown

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