Phenotypes > Myelodysplastic syndromes

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Myelodysplastic syndromes

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH60
Version ID
120
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Myelodysplastic syndromes' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Myelodysplastic syndromes' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'Myelodysplastic syndromes' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/175

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 20
Code Description Disease Medcode Category
7Q09700 Myelodysplastic syndrome drugs Band 1 Myelodysplastic syndromes 102712.0 Diagnosis of Myelodysplastic syndromes
B937.14 Myelodysplasia Myelodysplastic syndromes 14927.0 Diagnosis of Myelodysplastic syndromes
B937000 Refractory anaemia without sideroblasts, so stated Myelodysplastic syndromes 22890.0 Diagnosis of Myelodysplastic syndromes
B937100 Refractory anaemia with sideroblasts Myelodysplastic syndromes 10817.0 Diagnosis of Myelodysplastic syndromes
B937200 Refractory anaemia with excess of blasts Myelodysplastic syndromes 23875.0 Diagnosis of Myelodysplastic syndromes
B937300 Refractory anaemia with excess of blasts with transformation Myelodysplastic syndromes 44420.0 Diagnosis of Myelodysplastic syndromes
B937600 Refractory anaemia without ring sideroblasts Myelodysplastic syndromes 105985.0 Diagnosis of Myelodysplastic syndromes
B937700 Refractory anaemia with ring sideroblasts Myelodysplastic syndromes 106993.0 Diagnosis of Myelodysplastic syndromes
B937800 Refractory anaemia with multilineage dysplasia Myelodysplastic syndromes 104740.0 Diagnosis of Myelodysplastic syndromes
B937900 5Q minus syndrome Myelodysplastic syndromes 105915.0 Diagnosis of Myelodysplastic syndromes
B937911 Myelodysplastic syndrome isolated del(5q) chromosomal abnorm Myelodysplastic syndromes 105390.0 Diagnosis of Myelodysplastic syndromes
B937W00 Myelodysplastic syndrome, unspecified Myelodysplastic syndromes 45285.0 Diagnosis of Myelodysplastic syndromes
B937W11 Myelodysplasia Myelodysplastic syndromes 4561.0 Diagnosis of Myelodysplastic syndromes
B937X00 Refractory anaemia, unspecified Myelodysplastic syndromes 19130.0 Diagnosis of Myelodysplastic syndromes
BBmA.00 [M] Refractory anaemia with sideroblasts Myelodysplastic syndromes 56756.0 Diagnosis of Myelodysplastic syndromes
BBmB.00 [M]Refractory anaemia+excess of blasts with transformation Myelodysplastic syndromes 60186.0 Diagnosis of Myelodysplastic syndromes
BBmL.00 [M] Refractory anaemia with excess of blasts Myelodysplastic syndromes 94921.0 Diagnosis of Myelodysplastic syndromes
BBv..00 [M]Myelodysplastic syndrome Myelodysplastic syndromes 7799.0 Diagnosis of Myelodysplastic syndromes
ByuHD00 [X]Myelodysplastic syndrome, unspecified Myelodysplastic syndromes 45143.0 Diagnosis of Myelodysplastic syndromes
D213.00 Refractory Anaemia Myelodysplastic syndromes 16052.0 Diagnosis of Myelodysplastic syndromes
Rows: 20
Code Description Disease ReadcodeDescr Readcode
102712.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Myelodysplastic syndrome drugs Band 1 7Q09700
104740.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia with multilineage dysplasia B937800
105390.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Myelodysplastic syndrome isolated del(5q) chromosomal abnorm B937911
105915.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes 5Q minus syndrome B937900
105985.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia without ring sideroblasts B937600
106993.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia with ring sideroblasts B937700
10817.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia with sideroblasts B937100
14927.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Myelodysplasia B937.14
16052.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory Anaemia D213.00
19130.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia, unspecified B937X00
22890.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia without sideroblasts, so stated B937000
23875.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia with excess of blasts B937200
44420.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Refractory anaemia with excess of blasts with transformation B937300
45143.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes [X]Myelodysplastic syndrome, unspecified ByuHD00
45285.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Myelodysplastic syndrome, unspecified B937W00
4561.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes Myelodysplasia B937W11
56756.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes [M] Refractory anaemia with sideroblasts BBmA.00
60186.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes [M]Refractory anaemia+excess of blasts with transformation BBmB.00
7799.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes [M]Myelodysplastic syndrome BBv..00
94921.0 Diagnosis of Myelodysplastic syndromes Myelodysplastic syndromes [M] Refractory anaemia with excess of blasts BBmL.00
Rows: 1
Code Description Disease Category
D46 Myelodysplastic syndromes Myelodysplastic syndromes Diagnosis of Myelodysplastic syndromes

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH60/version/120/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH60/version/120/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH60', '120', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH60/version/120/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH60/version/120/export/codes/?format=json
CSV site_root/phenotypes/PH60/version/120/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH60', '120', api_client=client)

Version History

Version
ID		 Name Owner Publish date
120 Myelodysplastic syndromes ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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