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SpondyloArthropathy

Sara Muller, Samantha L Hider, Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen

ID
PH605
Version ID
1210
Type
Disease or Syndrome
Data Sources
Valid event data range
01/01/2010 - 31/12/2012
Sex
♀  Female ♂  Male
Agreement Date
2015-12-23
Coding system
Read codes v2
Collections
ClinicalCodes Repository Phenotype Library
Tags
No tags

Definition

The original algorithm consisted of two criteria. Individuals meeting at least one were considered to have RA. Criterion 1: ≥1 RA Read code and a disease modifying antirheumatic drug (DMARD) without an alternative indication. Criterion 2: ≥2 RA Read codes, with at least one ‘strong’ code and no alternative diagnoses. Lists of codes for consultations and prescriptions were obtained from the authors of the original algorithm where these were available, or compiled based on the original description and clinical knowledge. 4161 people with a first Read code for RA between 1 January 2010 and 31 December 2012 were selected from the Clinical Practice Research Datalink (CPRD, successor to the GPRD), and the criteria applied.

Publications

  • Sara Muller, Samantha L Hider,Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen, An algorithm to identify rheumatoid arthritis in primary care a Clinical Practice Research Datalink study. BMJ Open, 5(e009309), 2015.

Clinical Code List

Rows: 92
Code Description Entity type Category Coding System (Read)
7J34112 Buck fusion of lumbar spine for spondylolisthesis res34: spondyloarthropathy diagnostic Read
7J48500 Spondylolisthesis operation res34: spondyloarthropathy diagnostic Read
7J48511 Gill excision of spondylolisthesis res34: spondyloarthropathy diagnostic Read
7J48K00 Reduction of spondylolisthesis and fusion res34: spondyloarthropathy diagnostic Read
7J48L00 Fusion spondylolisthesis in situ res34: spondyloarthropathy diagnostic Read
F163200 Myelopathy due to spondylosis res34: spondyloarthropathy diagnostic Read
F337200 Nerve root and plexus compressions in spondylosis res34: spondyloarthropathy diagnostic Read
N10..00 Inflammatory spondylopathies res34: spondyloarthropathy diagnostic Read
N100.00 Ankylosing spondylitis res34: spondyloarthropathy diagnostic Read
N100.11 Marie - Strumpell spondylitis res34: spondyloarthropathy diagnostic Read
N101.00 Spinal enthesopathy res34: spondyloarthropathy diagnostic Read
N102.00 Sacroiliitis NEC res34: spondyloarthropathy diagnostic Read
N10y.00 Other inflammatory spondylopathies res34: spondyloarthropathy diagnostic Read
N10y000 Inflammatory spondylopathies in diseases EC res34: spondyloarthropathy diagnostic Read
N10yz00 Other inflammatory spondylopathies NOS res34: spondyloarthropathy diagnostic Read
N10z.00 Spondylitis NOS res34: spondyloarthropathy diagnostic Read
N11..00 Spondylosis and allied disorders res34: spondyloarthropathy diagnostic Read
N110.00 Cervical spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N110.11 Cervical spondylosis res34: spondyloarthropathy diagnostic Read
N110000 Single-level cervical spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N110100 Two-level cervical spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N110200 Multiple-level cervical spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N111.00 Cervical spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N111000 Single-level cervical spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N111100 Two-level cervical spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N111200 Multiple-level cervical spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N112.00 Thoracic spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N112.11 Thoracic spondylosis res34: spondyloarthropathy diagnostic Read
N112000 Single-level thoracic spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N112100 Two-level thoracic spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N112200 Multiple-level thoracic spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N112300 Dorsal spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N113.00 Thoracic spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N113000 Single-level thoracic spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N113200 Multiple-level thoracic spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N114.00 Lumbosacral spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N114.12 Lumbar spondylosis res34: spondyloarthropathy diagnostic Read
N114000 Single-level lumbosacral spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N114100 Two-level lumbosacral spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N114200 Multiple-level lumbosacral spondylosis without myelopathy res34: spondyloarthropathy diagnostic Read
N115.00 Lumbosacral spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N115000 Single-level lumbosacral spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N115100 Two-level lumbosacral spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N115200 Multiple-level lumbosacral spondylosis with myelopathy res34: spondyloarthropathy diagnostic Read
N118.00 Traumatic spondylopathy res34: spondyloarthropathy diagnostic Read
N119.00 Cervical spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N119000 Single-level cervical spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N119100 Two-level cervical spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N119200 Multiple-level cervical spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11A.00 Cervical spondylosis with vascular compression res34: spondyloarthropathy diagnostic Read
N11B.00 Thoracic spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11B000 Single-level thoracic spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11B100 Two-level thoracic spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11B200 Multiple-level thoracic spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11C.00 Lumbosacral spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11C000 Single-level lumbosacral spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11C100 Two-level lumbosacral spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11C200 Multiple-level lumbosacral spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
N11E.00 Cervical spondylosis res34: spondyloarthropathy diagnostic Read
N11y.00 Other spondyloses and allied disorders res34: spondyloarthropathy diagnostic Read
N11y200 Neuropathic spondylopathy res34: spondyloarthropathy diagnostic Read
N11z.00 Spondylosis NOS res34: spondyloarthropathy diagnostic Read
N11z000 Spondylosis without myelopathy, NOS res34: spondyloarthropathy diagnostic Read
N11z100 Spondylosis with myelopathy, NOS res34: spondyloarthropathy diagnostic Read
N11zz00 Spondylosis NOS res34: spondyloarthropathy diagnostic Read
N384.00 Acquired spondylolisthesis res34: spondyloarthropathy diagnostic Read
N384000 Dysplastic spondylolisthesis res34: spondyloarthropathy diagnostic Read
N384100 Isthmic spondylolisthesis res34: spondyloarthropathy diagnostic Read
N384200 Degenerative spondylolisthesis res34: spondyloarthropathy diagnostic Read
N384300 Pedicular spondylolisthesis res34: spondyloarthropathy diagnostic Read
N388.00 Spondylolysis res34: spondyloarthropathy diagnostic Read
Nyu6.00 [X]Spondylopathies res34: spondyloarthropathy diagnostic Read
Nyu6100 [X]Other specified inflammatory spondylopathies res34: spondyloarthropathy diagnostic Read
Nyu6300 [X]Other spondylosis with radiculopathy res34: spondyloarthropathy diagnostic Read
Nyu6400 [X]Other spondylosis res34: spondyloarthropathy diagnostic Read
Nyu6700 [X]Collapsed vertebra in diseases classified elsewhere res34: spondyloarthropathy diagnostic Read
Nyu6900 [X]Spondylopathy, unspecified res34: spondyloarthropathy diagnostic Read
PG11.00 Congenital lumbosacral spondylolysis res34: spondyloarthropathy diagnostic Read
PG12.00 Congenital spondylolisthesis res34: spondyloarthropathy diagnostic Read
PG46.00 Spondyloepiphyseal dysplasia res34: spondyloarthropathy diagnostic Read
PG46000 Spondyloepiphyseal dysplasia congenita res34: spondyloarthropathy diagnostic Read
PG46100 Spondyloepiphyseal dysplasia tarda res34: spondyloarthropathy diagnostic Read
PG4E.00 Spondylometaphyseal dysplasia res34: spondyloarthropathy diagnostic Read
S100B00 Closed fracture axis, spondylolysis res34: spondyloarthropathy diagnostic Read
S100J00 Closed fracture cervical vertebra, spondylolysis res34: spondyloarthropathy diagnostic Read
S102200 Closed fracture thoracic vertebra, spondylolysis res34: spondyloarthropathy diagnostic Read
S104200 Closed fracture lumbar vertebra, spondylolysis res34: spondyloarthropathy diagnostic Read
Zw04600 [Q] Spondylolisthesis grade 1 res34: spondyloarthropathy diagnostic Read
Zw04700 [Q] Spondylolisthesis grade 2 res34: spondyloarthropathy diagnostic Read
Zw04800 [Q] Spondylolisthesis grade 3 res34: spondyloarthropathy diagnostic Read
Zw04900 [Q] Spondylolisthesis grade 4 res34: spondyloarthropathy diagnostic Read
Zw04A00 [Q] Spondyloptosis res34: spondyloarthropathy diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH605/version/1210/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH605/version/1210/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH605', '1210', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH605/version/1210/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH605/version/1210/export/codes/?format=json
CSV site_root/phenotypes/PH605/version/1210/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH605', '1210', api_client=client)

Version History

Version
ID
Name Owner Publish date
1210 SpondyloArthropathy ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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