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Transplant

Sara Muller, Samantha L Hider, Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen

Type
Disease or Syndrome
ID
PH607
Version ID
1214
Data Sources
Valid event data range
01/01/2010 - 31/12/2012
Sex
Female, Male
Agreement Date
2015-12-23
Coding system
Read codes v2
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

The original algorithm consisted of two criteria. Individuals meeting at least one were considered to have RA. Criterion 1: ≥1 RA Read code and a disease modifying antirheumatic drug (DMARD) without an alternative indication. Criterion 2: ≥2 RA Read codes, with at least one ‘strong’ code and no alternative diagnoses. Lists of codes for consultations and prescriptions were obtained from the authors of the original algorithm where these were available, or compiled based on the original description and clinical knowledge. 4161 people with a first Read code for RA between 1 January 2010 and 31 December 2012 were selected from the Clinical Practice Research Datalink (CPRD, successor to the GPRD), and the criteria applied.

Publications

  • Sara Muller, Samantha L Hider,Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen, An algorithm to identify rheumatoid arthritis in primary care a Clinical Practice Research Datalink study. BMJ Open, 5(e009309), 2015.

Clinical Code List

Rows: 103
Code Description Entity type Category Coding System (Read)
7125 Transplantation of thymus gland res34: transplant diagnostic Read
7243600 Transplantation of conjunctiva res34: transplant diagnostic Read
7245800 Transplant of corneal limbal cells res34: transplant diagnostic Read
7450 Transplantation of lung res34: transplant diagnostic Read
7450000 Double lung transplant res34: transplant diagnostic Read
7450100 Single lung transplant res34: transplant diagnostic Read
7450y00 Other specified transplantation of lung res34: transplant diagnostic Read
7450z00 Transplantation of lung NOS res34: transplant diagnostic Read
764C.00 Transplantation of ileum res34: transplant diagnostic Read
7800 Transplantation of liver res34: transplant diagnostic Read
7800000 Orthotopic transplantation of liver res34: transplant diagnostic Read
7800100 Heterotopic transplantation of liver res34: transplant diagnostic Read
7800111 Auxillary liver transplant res34: transplant diagnostic Read
7800112 Piggy back liver transplant res34: transplant diagnostic Read
7800200 Replacement of previous liver transplant res34: transplant diagnostic Read
7800400 Orthotopic transplantation of whole liver res34: transplant diagnostic Read
7800500 Orthotopic transplantation of liver NEC res34: transplant diagnostic Read
7800y00 Other specified transplantation of liver res34: transplant diagnostic Read
7800z00 Transplantation of liver NOS res34: transplant diagnostic Read
7805211 Exploration of liver transplant res34: transplant diagnostic Read
7830 Transplantation of pancreas res34: transplant diagnostic Read
7830100 Transplantation of whole pancreas res34: transplant diagnostic Read
7830200 Transplantation of tail of pancreas res34: transplant diagnostic Read
7830300 Transplantation of islets of Langerhans res34: transplant diagnostic Read
7830z00 Transplantation of pancreas NOS res34: transplant diagnostic Read
7842000 Transplantation of spleen res34: transplant diagnostic Read
7900 Transplantation of heart and lung res34: transplant diagnostic Read
7900000 Allotransplantation of heart and lung res34: transplant diagnostic Read
7900z00 Transplantation of heart and lung NOS res34: transplant diagnostic Read
7901 Other transplantation of heart res34: transplant diagnostic Read
7901000 Allotransplantation of heart NEC res34: transplant diagnostic Read
7901100 Xenotransplantation of heart res34: transplant diagnostic Read
7901300 Piggyback transplantation of heart res34: transplant diagnostic Read
7901500 Revision of transplantation of heart NEC res34: transplant diagnostic Read
7901y00 Other specified other transplantation of heart res34: transplant diagnostic Read
7901z00 Other transplantation of heart NOS res34: transplant diagnostic Read
7B00.00 Transplantation of kidney res34: transplant diagnostic Read
7B00000 Autotransplant of kidney res34: transplant diagnostic Read
7B00100 Transplantation of kidney from live donor res34: transplant diagnostic Read
7B00111 Allotransplantation of kidney from live donor res34: transplant diagnostic Read
7B00200 Transplantation of kidney from cadaver res34: transplant diagnostic Read
7B00211 Allotransplantation of kidney from cadaver res34: transplant diagnostic Read
7B00212 Cadaveric renal transplant res34: transplant diagnostic Read
7B00300 Allotransplantation of kidney from cadaver, heart-beating res34: transplant diagnostic Read
7B00400 Allotransplantation kidney from cadaver, heart non-beating res34: transplant diagnostic Read
7B00600 Xenograft renal transplant res34: transplant diagnostic Read
7B00y00 Other specified transplantation of kidney res34: transplant diagnostic Read
7B00z00 Transplantation of kidney NOS res34: transplant diagnostic Read
7B01511 Excision of rejected transplanted kidney res34: transplant diagnostic Read
7B0F.00 Interventions associated with transplantation of kidney res34: transplant diagnostic Read
7B0F300 Post-transplantation of kidney examination, recipient res34: transplant diagnostic Read
7B0F400 Post-transplantation of kidney examination, live donor res34: transplant diagnostic Read
7B0Fy00 OS interventions associated with transplantation of kidney res34: transplant diagnostic Read
7B0Fz00 Interventions associated with transplantation of kidney NOS res34: transplant diagnostic Read
7H30z00 Transplantation of fascia NOS res34: transplant diagnostic Read
7K1Q.11 Bone marrow transplant res34: transplant diagnostic Read
7L02.00 Transplantation between systems res34: transplant diagnostic Read
7L02z00 Transplantation between systems NOS res34: transplant diagnostic Read
7L14500 Autologous peripheral blood stem cell transplant res34: transplant diagnostic Read
7L14700 Allogeneic peripheral blood stem cell transplant res34: transplant diagnostic Read
8C31.00 Transplant immunosuppression res34: transplant diagnostic Read
8HBB.00 Transplant follow-up res34: transplant diagnostic Read
9b8K.00 Transplantation surgery res34: transplant diagnostic Read
9b93000 Blood and marrow transplantation res34: transplant diagnostic Read
K0B5.00 Renal tubulo-interstitial disordrs in transplant rejectn res34: transplant diagnostic Read
Kyu1C00 [X]Renal tubulo-interstitial disorders/transplant rejection res34: transplant diagnostic Read
SP...18 Transplant complications res34: transplant diagnostic Read
SP08.00 Transplanted organ complication res34: transplant diagnostic Read
SP08000 Transplanted organ failure res34: transplant diagnostic Read
SP08100 Transplanted organ rejection res34: transplant diagnostic Read
SP08200 Bone-marrow transplant rejection res34: transplant diagnostic Read
SP08300 Kidney transplant failure and rejection res34: transplant diagnostic Read
SP08400 Heart transplant failure and rejection res34: transplant diagnostic Read
SP08500 Heart-lung transplant failure and rejection res34: transplant diagnostic Read
SP08600 Liver transplant failure and rejection res34: transplant diagnostic Read
SP08D00 Acute-on-chronic rejection of renal transplant res34: transplant diagnostic Read
SP08E00 Acute rejection of renal transplant - grade I res34: transplant diagnostic Read
SP08F00 Acute rejection of renal transplant - grade II res34: transplant diagnostic Read
SP08G00 Acute rejection of renal transplant - grade III res34: transplant diagnostic Read
SP08H00 Acute rejection of renal transplant res34: transplant diagnostic Read
SP08J00 Chronic rejection of renal transplant res34: transplant diagnostic Read
SP08N00 Unexplained episode of renal transplant dysfunction res34: transplant diagnostic Read
SP08P00 Stenosis of vein of transplanted kidney res34: transplant diagnostic Read
SP08R00 Renal transplant rejection res34: transplant diagnostic Read
SP08W00 Vascular complication of renal transplant res34: transplant diagnostic Read
SP08z00 Transplanted organ complication NOS res34: transplant diagnostic Read
TB00000 Heart transplant with complication, without blame res34: transplant diagnostic Read
TB00100 Kidney transplant with complication, without blame res34: transplant diagnostic Read
TB00111 Renal transplant with complication, without blame res34: transplant diagnostic Read
TB00200 Liver transplant with complication, without blame res34: transplant diagnostic Read
ZV42.00 [V]Transplanted organ or tissue res34: transplant diagnostic Read
ZV42.11 [V]Transplanted organ res34: transplant diagnostic Read
ZV42.12 [V]Transplanted tissue res34: transplant diagnostic Read
ZV42000 [V]Kidney transplanted res34: transplant diagnostic Read
ZV42100 [V]Heart transplanted res34: transplant diagnostic Read
ZV42500 [V]Cornea transplanted res34: transplant diagnostic Read
ZV42600 [V]Lung transplanted res34: transplant diagnostic Read
ZV42700 [V]Liver transplanted res34: transplant diagnostic Read
ZV42y00 [V]Other specified transplanted organ or tissue res34: transplant diagnostic Read
ZV42y11 [V]Intestine transplanted res34: transplant diagnostic Read
ZV42y12 [V]Pancreas transplanted res34: transplant diagnostic Read
ZV42z00 [V]Unspecified transplanted organ or tissue res34: transplant diagnostic Read
ZV59600 [V]Heart and lungs transplant status res34: transplant diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH607/version/1214/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH607/version/1214/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH607', '1214', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH607/version/1214/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH607/version/1214/export/codes/?format=json
CSV site_root/phenotypes/PH607/version/1214/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH607', '1214', api_client=client)

Version History

Version
ID
Name Owner Publish date
1214 Transplant ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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