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Unnamed Inflammatory Arthritis

Amanda Nicholson, Elizabeth Ford, Kevin A Davies, Helen E Smith, Greta Rait, A Rosemary Tate, Irene Petersen, Jackie Cassell

Type
Disease or Syndrome
ID
PH610
Version ID
1220
Data Sources
Valid event data range
01/01/2005 - 31/12/2008
Sex
Female, Male
Agreement Date
2013-02-01
Coding system
Read codes v2 OXMIS codes
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Methods:

We examined EHRs of 5,843 patients in the General Practice Research Database, aged $30y, with a first coded diagnosis of RA between 2005 and 2008. Lists of indicator markers for RA were developed initially by panels of clinicians drawing up code-lists and then modified based on scrutiny of available data. The prevalence of indicator markers, and their temporal relationship to RA codes, was examined in patients from 3y before to 14d after recorded RA diagnosis.

Findings:

Indicator markers were common throughout EHRs of RA patients, with 83.5% having 2 or more markers. 34% of patients received a disease-specific prescription before RA was coded; 42% had a referral to rheumatology, and 63% had a test for rheumatoid factor. 65% had at least one joint symptom or sign recorded and in 44% this was at least 6-months before recorded RA diagnosis.

Publications

  • Amanda Nicholson, Elizabeth Ford, Kevin A Davies, Helen E Smith, Greta Rait, A Rosemary Tate, Irene Petersen, Jackie Cassell, Optimising Use of Electronic Health Records to Describe the Presentation of Rheumatoid Arthritis in Primary Care A Strategy for Developing Code Lists. PLoS ONE, 8:2, 2013.

Clinical Code List

Rows: 35
Code Description Entity type Coding System (OXMIS Read) Category
N04..11 Inflammatory polyarthropathy res13: Unnamed Inflammatory Arthritis Read diagnostic
N045.00 Other juvenile arthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N045100 Juvenile seronegative polyarthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N04y.00 Other specified inflammatory polyarthropathy res13: Unnamed Inflammatory Arthritis Read diagnostic
N04y100 Sero negative arthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N04y111 Sero negative polyarthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N04yz00 Other specified inflammatory polyarthropathy NOS res13: Unnamed Inflammatory Arthritis Read diagnostic
N04z.00 Inflammatory polyarthropathy NOS res13: Unnamed Inflammatory Arthritis Read diagnostic
N060.11 Endemic polyarthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N062900 Allergic arthritis of multiple sites res13: Unnamed Inflammatory Arthritis Read diagnostic
N064900 Transient arthropathy of multiple sites res13: Unnamed Inflammatory Arthritis Read diagnostic
N065.00 Unspecified polyarthropathy or polyarthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N065.11 Polyarthropathy NEC res13: Unnamed Inflammatory Arthritis Read diagnostic
N065900 Unspecified polyarthropathy of multiple sites res13: Unnamed Inflammatory Arthritis Read diagnostic
N065z00 Unspecified polyarthropathy or polyarthritis NOS res13: Unnamed Inflammatory Arthritis Read diagnostic
N065z11 Polyarthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
N06z900 Arthropathy NOS; of multiple sites res13: Unnamed Inflammatory Arthritis Read diagnostic
N090900 Effusion of multiple joints res13: Unnamed Inflammatory Arthritis Read diagnostic
N093.00 Palindromic rheumatism res13: Unnamed Inflammatory Arthritis Read diagnostic
N093.11 Hench - Rosenberg syndrome res13: Unnamed Inflammatory Arthritis Read diagnostic
N093000 Palindromic rheumatism of unspecified site res13: Unnamed Inflammatory Arthritis Read diagnostic
N093100 Palindromic rheumatism of the shoulder region res13: Unnamed Inflammatory Arthritis Read diagnostic
N093200 Palindromic rheumatism of the upper arm res13: Unnamed Inflammatory Arthritis Read diagnostic
N093300 Palindromic rheumatism of the forearm res13: Unnamed Inflammatory Arthritis Read diagnostic
N093400 Palindromic rheumatism of the hand res13: Unnamed Inflammatory Arthritis Read diagnostic
N093500 Palindromic rheumatism of the pelvic region and thigh res13: Unnamed Inflammatory Arthritis Read diagnostic
N093600 Palindromic rheumatism of the lower leg res13: Unnamed Inflammatory Arthritis Read diagnostic
N093700 Palindromic rheumatism of the ankle and foot res13: Unnamed Inflammatory Arthritis Read diagnostic
N093800 Palindromic rheumatism of other specified site res13: Unnamed Inflammatory Arthritis Read diagnostic
N093900 Palindromic rheumatism of multiple sites res13: Unnamed Inflammatory Arthritis Read diagnostic
N093z00 Palindromic rheumatism NOS res13: Unnamed Inflammatory Arthritis Read diagnostic
N094900 Arthralgia of multiple joints res13: Unnamed Inflammatory Arthritis Read diagnostic
N095900 Multiple stiff joints res13: Unnamed Inflammatory Arthritis Read diagnostic
Nyu1.00 [X]Inflammatory polyarthropathies res13: Unnamed Inflammatory Arthritis Read diagnostic
Nyu1500 [X]Other juvenile arthritis res13: Unnamed Inflammatory Arthritis Read diagnostic
Rows: 4
Code Description Entity type Coding System (OXMIS Read) Category
7122A RHEUMATISM PALINDROMIC res13: Unnamed Inflammatory Arthritis OXMIS diagnostic
715 B POLYARTHRITIS res13: Unnamed Inflammatory Arthritis OXMIS diagnostic
7150SN ARTHRITIS SERO NEGATIVE res13: Unnamed Inflammatory Arthritis OXMIS diagnostic
7873DM POLYARTHRALGIA res13: Unnamed Inflammatory Arthritis OXMIS diagnostic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH610/version/1220/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH610/version/1220/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH610', '1220', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH610/version/1220/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH610/version/1220/export/codes/?format=json
CSV site_root/phenotypes/PH610/version/1220/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH610', '1220', api_client=client)

Version History

Version
ID
Name Owner Publish date
1220 Unnamed Inflammatory Arthritis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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