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Motor neuron disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH62
Version ID
124
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had motor neuron disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Motor neuron disease diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of motor neuron disease or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 12
Code Description Disease Medcode Category
7Q04100 Amyotrophic lateral sclerosis drugs Band 1 Motor neuron disease 109020.0 History of Motor neuron disease
F15..00 Anterior horn cell disease Motor neuron disease 21889.0 Diagnosis of Motor neuron disease
F152.00 Motor neurone disease Motor neuron disease 4796.0 Diagnosis of Motor neuron disease
F152000 Amyotrophic lateral sclerosis Motor neuron disease 36433.0 Diagnosis of Motor neuron disease
F152100 Progressive muscular atrophy Motor neuron disease 30987.0 Diagnosis of Motor neuron disease
F152111 Duchenne Aran muscular atrophy Motor neuron disease 7470.0 Diagnosis of Motor neuron disease
F152200 Progressive bulbar palsy Motor neuron disease 27377.0 Diagnosis of Motor neuron disease
F152300 Pseudobulbar palsy Motor neuron disease 18084.0 Diagnosis of Motor neuron disease
F152400 Primary lateral sclerosis Motor neuron disease 20845.0 Diagnosis of Motor neuron disease
F152z00 Motor neurone disease NOS Motor neuron disease 20120.0 Diagnosis of Motor neuron disease
F15y.00 Other anterior horn cell disease Motor neuron disease 71400.0 Diagnosis of Motor neuron disease
F15z.00 Anterior horn cell disease NOS Motor neuron disease 58729.0 Diagnosis of Motor neuron disease
Rows: 12
Code Description Disease ReadcodeDescr Readcode
109020.0 History of Motor neuron disease Motor neuron disease Amyotrophic lateral sclerosis drugs Band 1 7Q04100
18084.0 Diagnosis of Motor neuron disease Motor neuron disease Pseudobulbar palsy F152300
20120.0 Diagnosis of Motor neuron disease Motor neuron disease Motor neurone disease NOS F152z00
20845.0 Diagnosis of Motor neuron disease Motor neuron disease Primary lateral sclerosis F152400
21889.0 Diagnosis of Motor neuron disease Motor neuron disease Anterior horn cell disease F15..00
27377.0 Diagnosis of Motor neuron disease Motor neuron disease Progressive bulbar palsy F152200
30987.0 Diagnosis of Motor neuron disease Motor neuron disease Progressive muscular atrophy F152100
36433.0 Diagnosis of Motor neuron disease Motor neuron disease Amyotrophic lateral sclerosis F152000
4796.0 Diagnosis of Motor neuron disease Motor neuron disease Motor neurone disease F152.00
58729.0 Diagnosis of Motor neuron disease Motor neuron disease Anterior horn cell disease NOS F15z.00
71400.0 Diagnosis of Motor neuron disease Motor neuron disease Other anterior horn cell disease F15y.00
7470.0 Diagnosis of Motor neuron disease Motor neuron disease Duchenne Aran muscular atrophy F152111
Rows: 1
Code Description Disease Category
G12.2 Motor neuron disease Motor neuron disease Diagnosis of Motor neuron disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH62/version/124/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH62/version/124/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH62', '124', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH62/version/124/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH62/version/124/export/codes/?format=json
CSV site_root/phenotypes/PH62/version/124/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH62', '124', api_client=client)

Version History

Version
ID
Name Owner Publish date
124 Motor neuron disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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