Objectives:
Little is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.
Design:
Retrospective cohort study from 2000 to 2012.
Setting:
627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.
Participants:
Each identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.
Outcome measures:
Prevalence rates were calculated for 16 conditions.
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.
| Code | Description | Entity type | Coding System (OXMIS Read) | Category |
|---|---|---|---|---|
| 667B.00 | Nocturnal epilepsy | res26: Epilepsy | Read | diagnostic |
| F132100 | Progressive myoclonic epilepsy | res26: Epilepsy | Read | diagnostic |
| F25..00 | Epilepsy | res26: Epilepsy | Read | diagnostic |
| F250.00 | Generalised nonconvulsive epilepsy | res26: Epilepsy | Read | diagnostic |
| F250000 | Petit mal (minor) epilepsy | res26: Epilepsy | Read | diagnostic |
| F250011 | Epileptic absences | res26: Epilepsy | Read | diagnostic |
| F250100 | Pykno-epilepsy | res26: Epilepsy | Read | diagnostic |
| F250200 | Epileptic seizures - atonic | res26: Epilepsy | Read | diagnostic |
| F250300 | Epileptic seizures - akinetic | res26: Epilepsy | Read | diagnostic |
| F250500 | Lennox-Gastaut syndrome | res26: Epilepsy | Read | diagnostic |
| F250y00 | Other specified generalised nonconvulsive epilepsy | res26: Epilepsy | Read | diagnostic |
| F250z00 | Generalised nonconvulsive epilepsy NOS | res26: Epilepsy | Read | diagnostic |
| F251.00 | Generalised convulsive epilepsy | res26: Epilepsy | Read | diagnostic |
| F251000 | Grand mal (major) epilepsy | res26: Epilepsy | Read | diagnostic |
| F251011 | Tonic-clonic epilepsy | res26: Epilepsy | Read | diagnostic |
| F251111 | Otohara syndrome | res26: Epilepsy | Read | diagnostic |
| F251200 | Epileptic seizures - clonic | res26: Epilepsy | Read | diagnostic |
| F251300 | Epileptic seizures - myoclonic | res26: Epilepsy | Read | diagnostic |
| F251400 | Epileptic seizures - tonic | res26: Epilepsy | Read | diagnostic |
| F251500 | Tonic-clonic epilepsy | res26: Epilepsy | Read | diagnostic |
| F251y00 | Other specified generalised convulsive epilepsy | res26: Epilepsy | Read | diagnostic |
| F251z00 | Generalised convulsive epilepsy NOS | res26: Epilepsy | Read | diagnostic |
| F252.00 | Petit mal status | res26: Epilepsy | Read | diagnostic |
| F253.00 | Grand mal status | res26: Epilepsy | Read | diagnostic |
| F253.11 | Status epilepticus | res26: Epilepsy | Read | diagnostic |
| F254.00 | Partial epilepsy with impairment of consciousness | res26: Epilepsy | Read | diagnostic |
| F254000 | Temporal lobe epilepsy | res26: Epilepsy | Read | diagnostic |
| F254100 | Psychomotor epilepsy | res26: Epilepsy | Read | diagnostic |
| F254200 | Psychosensory epilepsy | res26: Epilepsy | Read | diagnostic |
| F254300 | Limbic system epilepsy | res26: Epilepsy | Read | diagnostic |
| F254400 | Epileptic automatism | res26: Epilepsy | Read | diagnostic |
| F254500 | Complex partial epileptic seizure | res26: Epilepsy | Read | diagnostic |
| F254z00 | Partial epilepsy with impairment of consciousness NOS | res26: Epilepsy | Read | diagnostic |
| F255.00 | Partial epilepsy without impairment of consciousness | res26: Epilepsy | Read | diagnostic |
| F255000 | Jacksonian, focal or motor epilepsy | res26: Epilepsy | Read | diagnostic |
| F255011 | Focal epilepsy | res26: Epilepsy | Read | diagnostic |
| F255012 | Motor epilepsy | res26: Epilepsy | Read | diagnostic |
| F255100 | Sensory induced epilepsy | res26: Epilepsy | Read | diagnostic |
| F255200 | Somatosensory epilepsy | res26: Epilepsy | Read | diagnostic |
| F255300 | Visceral reflex epilepsy | res26: Epilepsy | Read | diagnostic |
| F255311 | Partial epilepsy with autonomic symptoms | res26: Epilepsy | Read | diagnostic |
| F255400 | Visual reflex epilepsy | res26: Epilepsy | Read | diagnostic |
| F255500 | Unilateral epilepsy | res26: Epilepsy | Read | diagnostic |
| F255600 | Simple partial epileptic seizure | res26: Epilepsy | Read | diagnostic |
| F255y00 | Partial epilepsy without impairment of consciousness OS | res26: Epilepsy | Read | diagnostic |
| F255z00 | Partial epilepsy without impairment of consciousness NOS | res26: Epilepsy | Read | diagnostic |
| F257.00 | Kojevnikov's epilepsy | res26: Epilepsy | Read | diagnostic |
| F25D.00 | Menstrual epilepsy | res26: Epilepsy | Read | diagnostic |
| F25E.00 | Stress-induced epilepsy | res26: Epilepsy | Read | diagnostic |
| F25F.00 | Photosensitive epilepsy | res26: Epilepsy | Read | diagnostic |
| F25X.00 | Status epilepticus, unspecified | res26: Epilepsy | Read | diagnostic |
| F25y.00 | Other forms of epilepsy | res26: Epilepsy | Read | diagnostic |
| F25y000 | Cursive (running) epilepsy | res26: Epilepsy | Read | diagnostic |
| F25y100 | Gelastic epilepsy | res26: Epilepsy | Read | diagnostic |
| F25y200 | Locl-rlt(foc)(part)idiop epilep&epilptic syn seiz locl onset | res26: Epilepsy | Read | diagnostic |
| F25y300 | Complex partial status epilepticus | res26: Epilepsy | Read | diagnostic |
| F25y400 | Benign Rolandic epilepsy | res26: Epilepsy | Read | diagnostic |
| F25yz00 | Other forms of epilepsy NOS | res26: Epilepsy | Read | diagnostic |
| F25z.00 | Epilepsy NOS | res26: Epilepsy | Read | diagnostic |
| SC20000 | Traumatic epilepsy | res26: Epilepsy | Read | diagnostic |
| Code | Description | Entity type | Coding System (OXMIS Read) | Category |
|---|---|---|---|---|
| 2932 | PSYCHOSIS EPILEPTIC | res26: Epilepsy | OXMIS | diagnostic |
| 3032EP | EPILEPSY ALCOHOLIC | res26: Epilepsy | OXMIS | diagnostic |
| 342 E | PARKINSONIAN EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3450 | EPILEPSY NONCONVULSIVE GENERALIZED | res26: Epilepsy | OXMIS | diagnostic |
| 3451 | GRAND MAL EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3453AT | EPILEPSY AUTOMATISM | res26: Epilepsy | OXMIS | diagnostic |
| 3453P | EPILEPSY PERIPHERAL | res26: Epilepsy | OXMIS | diagnostic |
| 3453T | TEMPORAL LOBE EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3459A | POST-TRAUMATIC EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3459AB | ABDOMEN CONVULSIVE EQUIVALENT (EPILEPSY) | res26: Epilepsy | OXMIS | diagnostic |
| 3459BA | IDOPATHIC EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3459D | ISCHAEMIC EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
| 3459N | NOCTURNAL EPILEPSY | res26: Epilepsy | OXMIS | diagnostic |
To Export Phenotype Details:
| Format | API |
|---|---|
| XML | site_root/api/v1/public/phenotypes/PH630/version/1260/detail/?format=xml |
| JSON | site_root/api/v1/public/phenotypes/PH630/version/1260/detail/?format=json |
| R Package |
|
To Export Phenotype Code List:
| Format | API |
|---|---|
| XML | site_root/api/v1/public/phenotypes/PH630/version/1260/export/codes/?format=xml |
| JSON | site_root/api/v1/public/phenotypes/PH630/version/1260/export/codes/?format=json |
| CSV | site_root/phenotypes/PH630/version/1260/export/codes/ |
| R Package |
|
| Version ID |
Name | Owner | Publish date | |
|---|---|---|---|---|
| 1260 | Epilepsy | ieuan.scanlon | 2021-10-06 | currently shown |
Export - export all codes into a csv file/JSON/XML for the current phenotype version.
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