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Epilepsy

Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis

Type
Disease or Syndrome
ID
PH630
Version ID
1260
Data Sources
Valid event data range
01/04/2000 - 31/03/2012
Sex
Male
Agreement Date
2015-12-15
Coding system
Read codes v2 OXMIS codes
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Objectives:

Little is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.

Design:

Retrospective cohort study from 2000 to 2012.

Setting:

627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.

Participants:

Each identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.

Outcome measures:

Prevalence rates were calculated for 16 conditions.

Publications

  • Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.

Clinical Code List

Rows: 60
Code Description Entity type Coding System (OXMIS Read) Category
667B.00 Nocturnal epilepsy res26: Epilepsy Read diagnostic
F132100 Progressive myoclonic epilepsy res26: Epilepsy Read diagnostic
F25..00 Epilepsy res26: Epilepsy Read diagnostic
F250.00 Generalised nonconvulsive epilepsy res26: Epilepsy Read diagnostic
F250000 Petit mal (minor) epilepsy res26: Epilepsy Read diagnostic
F250011 Epileptic absences res26: Epilepsy Read diagnostic
F250100 Pykno-epilepsy res26: Epilepsy Read diagnostic
F250200 Epileptic seizures - atonic res26: Epilepsy Read diagnostic
F250300 Epileptic seizures - akinetic res26: Epilepsy Read diagnostic
F250500 Lennox-Gastaut syndrome res26: Epilepsy Read diagnostic
F250y00 Other specified generalised nonconvulsive epilepsy res26: Epilepsy Read diagnostic
F250z00 Generalised nonconvulsive epilepsy NOS res26: Epilepsy Read diagnostic
F251.00 Generalised convulsive epilepsy res26: Epilepsy Read diagnostic
F251000 Grand mal (major) epilepsy res26: Epilepsy Read diagnostic
F251011 Tonic-clonic epilepsy res26: Epilepsy Read diagnostic
F251111 Otohara syndrome res26: Epilepsy Read diagnostic
F251200 Epileptic seizures - clonic res26: Epilepsy Read diagnostic
F251300 Epileptic seizures - myoclonic res26: Epilepsy Read diagnostic
F251400 Epileptic seizures - tonic res26: Epilepsy Read diagnostic
F251500 Tonic-clonic epilepsy res26: Epilepsy Read diagnostic
F251y00 Other specified generalised convulsive epilepsy res26: Epilepsy Read diagnostic
F251z00 Generalised convulsive epilepsy NOS res26: Epilepsy Read diagnostic
F252.00 Petit mal status res26: Epilepsy Read diagnostic
F253.00 Grand mal status res26: Epilepsy Read diagnostic
F253.11 Status epilepticus res26: Epilepsy Read diagnostic
F254.00 Partial epilepsy with impairment of consciousness res26: Epilepsy Read diagnostic
F254000 Temporal lobe epilepsy res26: Epilepsy Read diagnostic
F254100 Psychomotor epilepsy res26: Epilepsy Read diagnostic
F254200 Psychosensory epilepsy res26: Epilepsy Read diagnostic
F254300 Limbic system epilepsy res26: Epilepsy Read diagnostic
F254400 Epileptic automatism res26: Epilepsy Read diagnostic
F254500 Complex partial epileptic seizure res26: Epilepsy Read diagnostic
F254z00 Partial epilepsy with impairment of consciousness NOS res26: Epilepsy Read diagnostic
F255.00 Partial epilepsy without impairment of consciousness res26: Epilepsy Read diagnostic
F255000 Jacksonian, focal or motor epilepsy res26: Epilepsy Read diagnostic
F255011 Focal epilepsy res26: Epilepsy Read diagnostic
F255012 Motor epilepsy res26: Epilepsy Read diagnostic
F255100 Sensory induced epilepsy res26: Epilepsy Read diagnostic
F255200 Somatosensory epilepsy res26: Epilepsy Read diagnostic
F255300 Visceral reflex epilepsy res26: Epilepsy Read diagnostic
F255311 Partial epilepsy with autonomic symptoms res26: Epilepsy Read diagnostic
F255400 Visual reflex epilepsy res26: Epilepsy Read diagnostic
F255500 Unilateral epilepsy res26: Epilepsy Read diagnostic
F255600 Simple partial epileptic seizure res26: Epilepsy Read diagnostic
F255y00 Partial epilepsy without impairment of consciousness OS res26: Epilepsy Read diagnostic
F255z00 Partial epilepsy without impairment of consciousness NOS res26: Epilepsy Read diagnostic
F257.00 Kojevnikov's epilepsy res26: Epilepsy Read diagnostic
F25D.00 Menstrual epilepsy res26: Epilepsy Read diagnostic
F25E.00 Stress-induced epilepsy res26: Epilepsy Read diagnostic
F25F.00 Photosensitive epilepsy res26: Epilepsy Read diagnostic
F25X.00 Status epilepticus, unspecified res26: Epilepsy Read diagnostic
F25y.00 Other forms of epilepsy res26: Epilepsy Read diagnostic
F25y000 Cursive (running) epilepsy res26: Epilepsy Read diagnostic
F25y100 Gelastic epilepsy res26: Epilepsy Read diagnostic
F25y200 Locl-rlt(foc)(part)idiop epilep&epilptic syn seiz locl onset res26: Epilepsy Read diagnostic
F25y300 Complex partial status epilepticus res26: Epilepsy Read diagnostic
F25y400 Benign Rolandic epilepsy res26: Epilepsy Read diagnostic
F25yz00 Other forms of epilepsy NOS res26: Epilepsy Read diagnostic
F25z.00 Epilepsy NOS res26: Epilepsy Read diagnostic
SC20000 Traumatic epilepsy res26: Epilepsy Read diagnostic
Rows: 13
Code Description Entity type Coding System (OXMIS Read) Category
2932 PSYCHOSIS EPILEPTIC res26: Epilepsy OXMIS diagnostic
3032EP EPILEPSY ALCOHOLIC res26: Epilepsy OXMIS diagnostic
342 E PARKINSONIAN EPILEPSY res26: Epilepsy OXMIS diagnostic
3450 EPILEPSY NONCONVULSIVE GENERALIZED res26: Epilepsy OXMIS diagnostic
3451 GRAND MAL EPILEPSY res26: Epilepsy OXMIS diagnostic
3453AT EPILEPSY AUTOMATISM res26: Epilepsy OXMIS diagnostic
3453P EPILEPSY PERIPHERAL res26: Epilepsy OXMIS diagnostic
3453T TEMPORAL LOBE EPILEPSY res26: Epilepsy OXMIS diagnostic
3459A POST-TRAUMATIC EPILEPSY res26: Epilepsy OXMIS diagnostic
3459AB ABDOMEN CONVULSIVE EQUIVALENT (EPILEPSY) res26: Epilepsy OXMIS diagnostic
3459BA IDOPATHIC EPILEPSY res26: Epilepsy OXMIS diagnostic
3459D ISCHAEMIC EPILEPSY res26: Epilepsy OXMIS diagnostic
3459N NOCTURNAL EPILEPSY res26: Epilepsy OXMIS diagnostic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH630/version/1260/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH630/version/1260/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH630', '1260', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH630/version/1260/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH630/version/1260/export/codes/?format=json
CSV site_root/phenotypes/PH630/version/1260/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH630', '1260', api_client=client)

Version History

Version
ID
Name Owner Publish date
1260 Epilepsy ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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