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OsteoArthritis

Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis

Type
Disease or Syndrome
ID
PH635
Version ID
1270
Data Sources
Valid event data range
01/04/2000 - 31/03/2012
Sex
Male
Agreement Date
2015-12-15
Coding system
Read codes v2 OXMIS codes
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Objectives:

Little is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.

Design:

Retrospective cohort study from 2000 to 2012.

Setting:

627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.

Participants:

Each identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.

Outcome measures:

Prevalence rates were calculated for 16 conditions.

Publications

  • Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.

Clinical Code List

Rows: 105
Code Description Entity type Coding System (OXMIS Read) Category
N05..00 Osteoarthritis and allied disorders res26: Osteoarthritis Read diagnostic
N05..11 Osteoarthritis res26: Osteoarthritis Read diagnostic
N050.00 Generalised osteoarthritis - OA res26: Osteoarthritis Read diagnostic
N050000 Generalised osteoarthritis of unspecified site res26: Osteoarthritis Read diagnostic
N050100 Generalised osteoarthritis of the hand res26: Osteoarthritis Read diagnostic
N050200 Generalised osteoarthritis of multiple sites res26: Osteoarthritis Read diagnostic
N050400 Primary generalized osteoarthrosis res26: Osteoarthritis Read diagnostic
N050600 Erosive osteoarthrosis res26: Osteoarthritis Read diagnostic
N050z00 Generalised osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N051.00 Localised, primary osteoarthritis res26: Osteoarthritis Read diagnostic
N051000 Localised, primary osteoarthritis of unspecified site res26: Osteoarthritis Read diagnostic
N051100 Localised, primary osteoarthritis of the shoulder region res26: Osteoarthritis Read diagnostic
N051200 Localised, primary osteoarthritis of the upper arm res26: Osteoarthritis Read diagnostic
N051300 Localised, primary osteoarthritis of the forearm res26: Osteoarthritis Read diagnostic
N051400 Localised, primary osteoarthritis of the hand res26: Osteoarthritis Read diagnostic
N051500 Localised, primary osteoarthritis of the pelvic region/thigh res26: Osteoarthritis Read diagnostic
N051600 Localised, primary osteoarthritis of the lower leg res26: Osteoarthritis Read diagnostic
N051700 Localised, primary osteoarthritis of the ankle and foot res26: Osteoarthritis Read diagnostic
N051800 Localised, primary osteoarthritis of other specified site res26: Osteoarthritis Read diagnostic
N051D00 Localised, primary osteoarthritis of the wrist res26: Osteoarthritis Read diagnostic
N051E00 Localised, primary osteoarthritis of toe res26: Osteoarthritis Read diagnostic
N051F00 Localised, primary osteoarthritis of elbow res26: Osteoarthritis Read diagnostic
N051z00 Localised, primary osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N052.00 Localised, secondary osteoarthritis res26: Osteoarthritis Read diagnostic
N052000 Localised, secondary osteoarthritis of unspecified site res26: Osteoarthritis Read diagnostic
N052100 Localised, secondary osteoarthritis of the shoulder region res26: Osteoarthritis Read diagnostic
N052200 Localised, secondary osteoarthritis of the upper arm res26: Osteoarthritis Read diagnostic
N052300 Localised, secondary osteoarthritis of the forearm res26: Osteoarthritis Read diagnostic
N052400 Localised, secondary osteoarthritis of the hand res26: Osteoarthritis Read diagnostic
N052500 Localised, secondary osteoarthritis of pelvic region/thigh res26: Osteoarthritis Read diagnostic
N052600 Localised, secondary osteoarthritis of the lower leg res26: Osteoarthritis Read diagnostic
N052700 Localised, secondary osteoarthritis of the ankle and foot res26: Osteoarthritis Read diagnostic
N052800 Localised, secondary osteoarthritis of other specified site res26: Osteoarthritis Read diagnostic
N052z00 Localised, secondary osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N053.00 Localised osteoarthritis, unspecified res26: Osteoarthritis Read diagnostic
N053000 Localised osteoarthritis, unspecified, of unspecified site res26: Osteoarthritis Read diagnostic
N053100 Localised osteoarthritis, unspecified, of shoulder region res26: Osteoarthritis Read diagnostic
N053200 Localised osteoarthritis, unspecified, of the upper arm res26: Osteoarthritis Read diagnostic
N053300 Localised osteoarthritis, unspecified, of the forearm res26: Osteoarthritis Read diagnostic
N053400 Localised osteoarthritis, unspecified, of the hand res26: Osteoarthritis Read diagnostic
N053500 Localised osteoarthritis, unspecified, pelvic region/thigh res26: Osteoarthritis Read diagnostic
N053600 Localised osteoarthritis, unspecified, of the lower leg res26: Osteoarthritis Read diagnostic
N053611 Patellofemoral osteoarthritis res26: Osteoarthritis Read diagnostic
N053700 Localised osteoarthritis, unspecified, of the ankle and foot res26: Osteoarthritis Read diagnostic
N053800 Localised osteoarthritis, unspecified, of other spec site res26: Osteoarthritis Read diagnostic
N053z00 Localised osteoarthritis, unspecified, NOS res26: Osteoarthritis Read diagnostic
N054.00 Oligoarticular osteoarthritis, unspecified res26: Osteoarthritis Read diagnostic
N054000 Oligoarticular osteoarthritis, unspec, of unspecified sites res26: Osteoarthritis Read diagnostic
N054100 Oligoarticular osteoarthritis, unspecified, of shoulder res26: Osteoarthritis Read diagnostic
N054200 Oligoarticular osteoarthritis, unspecified, of upper arm res26: Osteoarthritis Read diagnostic
N054400 Oligoarticular osteoarthritis, unspecified, of hand res26: Osteoarthritis Read diagnostic
N054500 Oligoarticular osteoarthritis, unspecified, of pelvis/thigh res26: Osteoarthritis Read diagnostic
N054600 Oligoarticular osteoarthritis, unspecified, of lower leg res26: Osteoarthritis Read diagnostic
N054700 Oligoarticular osteoarthritis, unspecified, of ankle/foot res26: Osteoarthritis Read diagnostic
N054800 Oligoarticular osteoarthritis, unspecified, other spec sites res26: Osteoarthritis Read diagnostic
N054900 Oligoarticular osteoarthritis, unspecified, multiple sites res26: Osteoarthritis Read diagnostic
N054z00 Osteoarthritis of more than one site, unspecified, NOS res26: Osteoarthritis Read diagnostic
N05z.00 Osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z000 Osteoarthritis NOS, of unspecified site res26: Osteoarthritis Read diagnostic
N05z100 Osteoarthritis NOS, of shoulder region res26: Osteoarthritis Read diagnostic
N05z200 Osteoarthritis NOS, of the upper arm res26: Osteoarthritis Read diagnostic
N05z211 Elbow osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z300 Osteoarthritis NOS, of the forearm res26: Osteoarthritis Read diagnostic
N05z311 Wrist osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z400 Osteoarthritis NOS, of the hand res26: Osteoarthritis Read diagnostic
N05z411 Finger osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z412 Thumb osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z500 Osteoarthritis NOS, pelvic region/thigh res26: Osteoarthritis Read diagnostic
N05z511 Hip osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z600 Osteoarthritis NOS, of the lower leg res26: Osteoarthritis Read diagnostic
N05z611 Knee osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z700 Osteoarthritis NOS, of ankle and foot res26: Osteoarthritis Read diagnostic
N05z711 Ankle osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z712 Foot osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z713 Toe osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N05z800 Osteoarthritis NOS, other specified site res26: Osteoarthritis Read diagnostic
N05z900 Osteoarthritis NOS, of shoulder res26: Osteoarthritis Read diagnostic
N05zA00 Osteoarthritis NOS, of sternoclavicular joint res26: Osteoarthritis Read diagnostic
N05zB00 Osteoarthritis NOS, of acromioclavicular joint res26: Osteoarthritis Read diagnostic
N05zC00 Osteoarthritis NOS, of elbow res26: Osteoarthritis Read diagnostic
N05zD00 Osteoarthritis NOS, of distal radio-ulnar joint res26: Osteoarthritis Read diagnostic
N05zE00 Osteoarthritis NOS, of wrist res26: Osteoarthritis Read diagnostic
N05zF00 Osteoarthritis NOS, of MCP joint res26: Osteoarthritis Read diagnostic
N05zG00 Osteoarthritis NOS, of PIP joint of finger res26: Osteoarthritis Read diagnostic
N05zH00 Osteoarthritis NOS, of DIP joint of finger res26: Osteoarthritis Read diagnostic
N05zJ00 Osteoarthritis NOS, of hip res26: Osteoarthritis Read diagnostic
N05zK00 Osteoarthritis NOS, of sacro-iliac joint res26: Osteoarthritis Read diagnostic
N05zL00 Osteoarthritis NOS, of knee res26: Osteoarthritis Read diagnostic
N05zM00 Osteoarthritis NOS, of tibio-fibular joint res26: Osteoarthritis Read diagnostic
N05zN00 Osteoarthritis NOS, of ankle res26: Osteoarthritis Read diagnostic
N05zP00 Osteoarthritis NOS, of subtalar joint res26: Osteoarthritis Read diagnostic
N05zQ00 Osteoarthritis NOS, of talonavicular joint res26: Osteoarthritis Read diagnostic
N05zR00 Osteoarthritis NOS, of other tarsal joint res26: Osteoarthritis Read diagnostic
N05zS00 Osteoarthritis NOS, of 1st MTP joint res26: Osteoarthritis Read diagnostic
N05zT00 Osteoarthritis NOS, of lesser MTP joint res26: Osteoarthritis Read diagnostic
N05zU00 Osteoarthritis NOS, of IP joint of toe res26: Osteoarthritis Read diagnostic
N05zz00 Osteoarthritis NOS res26: Osteoarthritis Read diagnostic
N11..12 Osteoarthritis of spine res26: Osteoarthritis Read diagnostic
N110.12 Osteoarthritis cervical spine res26: Osteoarthritis Read diagnostic
N11D.00 Osteoarthritis of spine res26: Osteoarthritis Read diagnostic
N11D000 Osteoarthritis of cervical spine res26: Osteoarthritis Read diagnostic
N11D100 Osteoarthritis of thoracic spine res26: Osteoarthritis Read diagnostic
N11D200 Osteoarthritis of lumbar spine res26: Osteoarthritis Read diagnostic
N11D300 Osteoarthritis of spine NOS res26: Osteoarthritis Read diagnostic
N11z.11 Osteoarthritis spine res26: Osteoarthritis Read diagnostic
Rows: 23
Code Description Entity type Coding System (OXMIS Read) Category
7130A OSTEOARTHRITIS res26: Osteoarthritis OXMIS diagnostic
7130AA OSTEOARTHROSIS ANKLE res26: Osteoarthritis OXMIS diagnostic
7130AB OSTEOARTHROSIS res26: Osteoarthritis OXMIS diagnostic
7130AC OSTEOARTHROSIS ACROMIO CLAVICULAR JOINT res26: Osteoarthritis OXMIS diagnostic
7130AG OSTEOARTHROSIS GENERAL res26: Osteoarthritis OXMIS diagnostic
7130AW OSTEOARTHROSIS WRIST res26: Osteoarthritis OXMIS diagnostic
7130B OSTEOARTHROSIS KNEE(S) res26: Osteoarthritis OXMIS diagnostic
7130C OSTEOARTHROSIS FINGERS res26: Osteoarthritis OXMIS diagnostic
7130CT THUMB OSTEOARTHROSIS res26: Osteoarthritis OXMIS diagnostic
7130D OSTEOARTHROSIS HIP res26: Osteoarthritis OXMIS diagnostic
7130DA OSTEOARTHRITIS HIP res26: Osteoarthritis OXMIS diagnostic
7130E OSTEOARTHROSIS SHOULDER res26: Osteoarthritis OXMIS diagnostic
7130EA STERNOCLAVICULAR JOINT OSTEOARTHROSIS res26: Osteoarthritis OXMIS diagnostic
7130EL OSTEOARTHROSIS ELBOW res26: Osteoarthritis OXMIS diagnostic
7130FT OSTEOARTHROSIS FOOT res26: Osteoarthritis OXMIS diagnostic
7130H OSTEOARTHROSIS TOE res26: Osteoarthritis OXMIS diagnostic
7130MD TEMPOROMANDIBULAR OSTEOARTHROSIS res26: Osteoarthritis OXMIS diagnostic
7130N OSTEOARTHROSIS HANDS res26: Osteoarthritis OXMIS diagnostic
7130PA OSTEOARTHRITIC PROTRUSION ACETABULUM res26: Osteoarthritis OXMIS diagnostic
7131A OSTEOARTHROSIS NECK res26: Osteoarthritis OXMIS diagnostic
7131BR SPONDYLITIS OSTEOARTHRITIC res26: Osteoarthritis OXMIS diagnostic
7131C OSTEOARTHROSIS SPINE res26: Osteoarthritis OXMIS diagnostic
7131DL LUMBAR OSTEOARTHRITIS res26: Osteoarthritis OXMIS diagnostic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH635/version/1270/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH635/version/1270/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH635', '1270', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH635/version/1270/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH635/version/1270/export/codes/?format=json
CSV site_root/phenotypes/PH635/version/1270/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH635', '1270', api_client=client)

Version History

Version
ID
Name Owner Publish date
1270 OsteoArthritis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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