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Rheumatoid arthritis

Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis

Type
Disease or Syndrome
ID
PH637
Version ID
1274
Data Sources
Valid event data range
01/04/2000 - 31/03/2012
Sex
Male
Agreement Date
2015-12-15
Coding system
Read codes v2
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Objectives:

Little is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.

Design:

Retrospective cohort study from 2000 to 2012.

Setting:

627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.

Participants:

Each identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.

Outcome measures:

Prevalence rates were calculated for 16 conditions.

Publications

  • Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.

Clinical Code List

Rows: 54
Code Description Entity type Category Coding System (Read)
14G1.00 H/O: rheumatoid arthritis res26: RA diagnostic Read
38DZ.00 Disease activity score in rheumatoid arthritis res26: RA diagnostic Read
66H..13 Rheumatoid arthrit. monitoring res26: RA diagnostic Read
7P20300 Delivery of rehabilitation for rheumatoid arthritis res26: RA diagnostic Read
F371200 Polyneuropathy in rheumatoid arthritis res26: RA diagnostic Read
F396400 Myopathy due to rheumatoid arthritis res26: RA diagnostic Read
G5y8.00 Rheumatoid myocarditis res26: RA diagnostic Read
G5yA.00 Rheumatoid carditis res26: RA diagnostic Read
H570.00 Rheumatoid lung res26: RA diagnostic Read
N04..00 Rheumatoid arthritis and other inflammatory polyarthropathy res26: RA diagnostic Read
N040.00 Rheumatoid arthritis res26: RA diagnostic Read
N040000 Rheumatoid arthritis of cervical spine res26: RA diagnostic Read
N040100 Other rheumatoid arthritis of spine res26: RA diagnostic Read
N040200 Rheumatoid arthritis of shoulder res26: RA diagnostic Read
N040400 Rheumatoid arthritis of acromioclavicular joint res26: RA diagnostic Read
N040500 Rheumatoid arthritis of elbow res26: RA diagnostic Read
N040600 Rheumatoid arthritis of distal radio-ulnar joint res26: RA diagnostic Read
N040700 Rheumatoid arthritis of wrist res26: RA diagnostic Read
N040800 Rheumatoid arthritis of MCP joint res26: RA diagnostic Read
N040900 Rheumatoid arthritis of PIP joint of finger res26: RA diagnostic Read
N040A00 Rheumatoid arthritis of DIP joint of finger res26: RA diagnostic Read
N040B00 Rheumatoid arthritis of hip res26: RA diagnostic Read
N040C00 Rheumatoid arthritis of sacro-iliac joint res26: RA diagnostic Read
N040D00 Rheumatoid arthritis of knee res26: RA diagnostic Read
N040F00 Rheumatoid arthritis of ankle res26: RA diagnostic Read
N040G00 Rheumatoid arthritis of subtalar joint res26: RA diagnostic Read
N040H00 Rheumatoid arthritis of talonavicular joint res26: RA diagnostic Read
N040J00 Rheumatoid arthritis of other tarsal joint res26: RA diagnostic Read
N040K00 Rheumatoid arthritis of 1st MTP joint res26: RA diagnostic Read
N040L00 Rheumatoid arthritis of lesser MTP joint res26: RA diagnostic Read
N040N00 Rheumatoid vasculitis res26: RA diagnostic Read
N040P00 Seronegative rheumatoid arthritis res26: RA diagnostic Read
N040R00 Rheumatoid nodule res26: RA diagnostic Read
N040S00 Rheumatoid arthritis - multiple joint res26: RA diagnostic Read
N040T00 Flare of rheumatoid arthritis res26: RA diagnostic Read
N041.00 Felty's syndrome res26: RA diagnostic Read
N042.00 Other rheumatoid arthropathy + visceral/systemic involvement res26: RA diagnostic Read
N042100 Rheumatoid lung disease res26: RA diagnostic Read
N042200 Rheumatoid nodule res26: RA diagnostic Read
N042z00 Rheumatoid arthropathy + visceral/systemic involvement NOS res26: RA diagnostic Read
N043000 Juvenile rheumatoid arthropathy unspecified res26: RA diagnostic Read
N043100 Acute polyarticular juvenile rheumatoid arthritis res26: RA diagnostic Read
N043200 Pauciarticular juvenile rheumatoid arthritis res26: RA diagnostic Read
N043300 Monarticular juvenile rheumatoid arthritis res26: RA diagnostic Read
N043z00 Juvenile rheumatoid arthritis NOS res26: RA diagnostic Read
N045500 Juvenile rheumatoid arthritis res26: RA diagnostic Read
N047.00 Seropositive errosive rheumatoid arthritis res26: RA diagnostic Read
N04X.00 Seropositive rheumatoid arthritis, unspecified res26: RA diagnostic Read
N04y000 Rheumatoid lung res26: RA diagnostic Read
N04y011 Caplan's syndrome res26: RA diagnostic Read
N04y012 Fibrosing alveolitis associated with rheumatoid arthritis res26: RA diagnostic Read
Nyu1100 [X]Other seropositive rheumatoid arthritis res26: RA diagnostic Read
Nyu1200 [X]Other specified rheumatoid arthritis res26: RA diagnostic Read
Nyu1G00 [X]Seropositive rheumatoid arthritis, unspecified res26: RA diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH637/version/1274/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH637/version/1274/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH637', '1274', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH637/version/1274/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH637/version/1274/export/codes/?format=json
CSV site_root/phenotypes/PH637/version/1274/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH637', '1274', api_client=client)

Version History

Version
ID
Name Owner Publish date
1274 Rheumatoid arthritis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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