Serious Mental Illness (SMI)
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis
PH638 / 1276 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexMaleValid Event Date Range01/04/2000 - 31/03/2012Coding SystemRead codes v2Data SourcesCollectionsClinicalCodes RepositoryPhenotype LibraryTagsNo dataDefinition
Objectives:
Little is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.
Design:
Retrospective cohort study from 2000 to 2012.
Setting:
627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.
Participants:
Each identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.
Outcome measures:
Prevalence rates were calculated for 16 conditions.
Implementation
Implementation
Clinical Code List
PUBLISHED - 268 Codes
Publication
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.
Citation Example
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis. PH638 / 1276 - Serious Mental Illness (SMI). Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH638/version/1276/detail/. [Accessed 31 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH638/version/1276/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH638',
version_id=1276
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH638',
version_id=1276
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH638/version/1276/export/codes/?format=json CSV site_root/phenotypes/PH638/version/1276/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH638',
version_id=1276
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH638',
version_id=1276
)Version History