Serious Mental Illness (SMI)
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis
PH638 / 1276 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexMaleValid Event Date Range01/04/2000 - 31/03/2012Coding SystemRead codes v2Data SourcesCollectionsClinicalCodes RepositoryPhenotype LibraryTagsNo dataOntologyNo dataDefinition
Implementation
Implementation
Clinical Code List
PUBLISHED
Publication
Related publications
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015.
Citation Example
Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis. PH638 / 1276 - Serious Mental Illness (SMI). Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH638/version/1276/detail/. [Accessed 17 February 2025]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH638/version/1276/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH638',
version_id=1276
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH638',
version_id=1276
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH638/version/1276/export/codes/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH638',
version_id=1276
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH638',
version_id=1276
)Version History