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Colon Cancer

David A Springate, Darren M Aschroft, Evangelos Kontopantelis, Tim Doran, Ronan Ryan, David Reeves

Type
Disease or Syndrome
ID
PH645
Version ID
1290
Data Sources
CPRD GOLD , Doctors Independent Network
Valid event data range
01/01/19997 - 31/12/2006
Sex
Female, Male
Agreement Date
2020-10-08
Coding system
Read codes v2
Tags /Collections
ClinicalCodes Repository Phenotype Library

Definition

Objectives:

To conduct a fully independent, external validation of a research study based on one electronic health record database using a different database sampling from the same population.

Design:

Retrospective cohort analysis of β-blocker therapy and all-cause mortality in patients with cancer.

Setting:

Two UK national primary care databases (PCDs): the Clinical Practice Research Datalink (CPRD) and Doctors’ Independent Network (DIN).

Participants:

CPRD data for 11 302 patients with cancer compared with published results from DIN for 3462 patients; study period January 1997 to December 2006.

Primary and secondary outcome measures:

All-cause mortality: overall; by treatment subgroup (β-blockers only, β-blockers plus other blood pressure lowering medicines (BPLM), other BPLMs only); and by cancer site.

Results:

Using CPRD, β-blocker use was not associated with mortality (HR=1.03, 95% CI 0.93 to 1.14, vs patients prescribed other BPLMs only), but DIN β-blocker users had significantly higher mortality (HR=1.18, 95% CI 1.04 to 1.33). However, these HRs were not statistically different (p=0.063), but did differ for patients on β-blockers alone (CPRD=0.94, 95% CI 0.82 to 1.07; DIN=1.37, 95% CI 1.16 to 1.61; p<0.001). Results for individual cancer sites differed by study, but only significantly for prostate and pancreas cancers. Results were robust under sensitivity analyses, but we could not be certain that mortality was identically defined in both databases.

Conclusions:

We found a complex pattern of similarities and differences between databases. Overall treatment effect estimates were not statistically different, adding to a growing body of evidence that different UK PCDs produce comparable effect estimates. However, individually the two studies lead to different conclusions regarding the safety of β-blockers and some subgroup effects differed significantly. Single studies using even internally wellvalidated databases do not guarantee generalisable results, especially for subgroups, and confirmatory studies using at least one other independent data source are strongly recommended.

Publications

  • David A Springate, Darrent M Aschroft, Evangelos Kontopantelis, Tim Doran, Ronan Ryan, David Reeves, Can analyses of electronic patient records be independently and externally validated? Study 2—the effect of β-adrenoceptor blocker therapy on cancer survival a retrospective cohort study. BMJ Open, 5(e007299), 2014.

Clinical Code List

Rows: 20
Code Description Entity type Category Coding System (Read)
B13..00 Malig neop of colon res24: colon cancer diagnostic Read
B130.00 Malig neop hepatic flex colon res24: colon cancer diagnostic Read
B131.00 Malig neop of transverse colon res24: colon cancer diagnostic Read
B132.00 Malig neop of descending colon res24: colon cancer diagnostic Read
B133.00 Malig neop of sigmoid colon res24: colon cancer diagnostic Read
B134.00 Malig neop of caecum res24: colon cancer diagnostic Read
B135.00 Malig neop of appendix res24: colon cancer diagnostic Read
B136.00 Malig neop of ascending colon res24: colon cancer diagnostic Read
B137.00 Malig neop splenic flex colon res24: colon cancer diagnostic Read
B138.00 Mal neop overlap lesn of colon res24: colon cancer diagnostic Read
B13y.00 Malig neop oth spec site colon res24: colon cancer diagnostic Read
B13z.00 Malig neop of colon NOS res24: colon cancer diagnostic Read
B14..00 Malig neop of rectum and anus res24: colon cancer diagnostic Read
B140.00 Malig neop rectosigmoid junct res24: colon cancer diagnostic Read
B141.00 Malig neop of rectum res24: colon cancer diagnostic Read
B142.00 Malig neop of anal canal res24: colon cancer diagnostic Read
B142000 Mal neopl of cloacogenic zone res24: colon cancer diagnostic Read
B143.00 Malig neop of anus unspecified res24: colon cancer diagnostic Read
B14y.00 Malig neop oth rectum and anus res24: colon cancer diagnostic Read
B14z.00 Malig neop rectum and anus NOS res24: colon cancer diagnostic Read

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH645/version/1290/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH645/version/1290/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH645', '1290', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH645/version/1290/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH645/version/1290/export/codes/?format=json
CSV site_root/phenotypes/PH645/version/1290/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH645', '1290', api_client=client)

Version History

Version
ID
Name Owner Publish date
1290 Colon Cancer ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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