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Polycystic ovarian syndrome

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH67
Version ID
134
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Polycystic ovarian syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Polycystic ovarian syndrome' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Polycystic ovarian syndrome' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 2
Code Description Disease Medcode Category
C164.12 Stein - Leventhal syndrome Polycystic ovarian syndrome 16103.0 Diagnosis of Polycystic ovarian syndrome
C165.00 Polycystic ovarian syndrome Polycystic ovarian syndrome 11347.0 Diagnosis of Polycystic ovarian syndrome
Rows: 2
Code Description Disease ReadcodeDescr Readcode
11347.0 Diagnosis of Polycystic ovarian syndrome Polycystic ovarian syndrome Polycystic ovarian syndrome C165.00
16103.0 Diagnosis of Polycystic ovarian syndrome Polycystic ovarian syndrome Stein - Leventhal syndrome C164.12
Rows: 1
Code Description Disease Category
E28.2 Polycystic ovarian syndrome Polycystic ovarian syndrome Diagnosis of Polycystic ovarian syndrome

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH67/version/134/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH67/version/134/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH67', '134', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH67/version/134/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH67/version/134/export/codes/?format=json
CSV site_root/phenotypes/PH67/version/134/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH67', '134', api_client=client)

Version History

Version
ID
Name Owner Publish date
134 Polycystic ovarian syndrome ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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