Phenotype Library | phenotype: Polycystic ovarian syndrome

Polycystic ovarian syndrome

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH67

Version ID

134

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Polycystic ovarian syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Polycystic ovarian syndrome' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Polycystic ovarian syndrome' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/198

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C867/2873 Polycystic ovarian syndrome - Primary care - Read codes v2

Rows: 2

Code	Description	Disease	Medcode	Category
C164.12	Stein - Leventhal syndrome	Polycystic ovarian syndrome	16103.0	Diagnosis of Polycystic ovarian syndrome
C165.00	Polycystic ovarian syndrome	Polycystic ovarian syndrome	11347.0	Diagnosis of Polycystic ovarian syndrome

C868/2875 Polycystic ovarian syndrome - Primary care - Med codes

Rows: 2

Code	Description	Disease	ReadcodeDescr	Readcode
11347.0	Diagnosis of Polycystic ovarian syndrome	Polycystic ovarian syndrome	Polycystic ovarian syndrome	C165.00
16103.0	Diagnosis of Polycystic ovarian syndrome	Polycystic ovarian syndrome	Stein - Leventhal syndrome	C164.12

C869/2877 Polycystic ovarian syndrome - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
E28.2	Polycystic ovarian syndrome	Polycystic ovarian syndrome	Diagnosis of Polycystic ovarian syndrome

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH67/version/134/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH67/version/134/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH67', '134', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH67/version/134/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH67/version/134/export/codes/?format=json
CSV	site_root/phenotypes/PH67/version/134/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH67', '134', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
134	Polycystic ovarian syndrome	ieuan.scanlon	2021-10-06	currently shown