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Polycythaemia vera

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH68
Version ID
136
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Polycythaemia vera' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Polycythaemia vera' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'Polycythaemia vera' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 7
Code Description Disease Medcode Category
B671.00 Chronic erythraemia Polycythaemia vera 37468.0 Diagnosis of Polycythaemia vera
B671.11 Heilmeyer - Schoner disease Polycythaemia vera 63653.0 Diagnosis of Polycythaemia vera
B934.00 Polycythaemia vera Polycythaemia vera 2481.0 Diagnosis of Polycythaemia vera
B934.11 Polycythaemia rubra vera Polycythaemia vera 5542.0 Diagnosis of Polycythaemia vera
B934.12 Primary polycythaemia Polycythaemia vera 36790.0 Diagnosis of Polycythaemia vera
BBs0.00 [M]Polycythaemia vera Polycythaemia vera 16922.0 Diagnosis of Polycythaemia vera
BBs0.11 [M]Polycythaemia rubra vera Polycythaemia vera 58888.0 Diagnosis of Polycythaemia vera
Rows: 7
Code Description Disease ReadcodeDescr Readcode
16922.0 Diagnosis of Polycythaemia vera Polycythaemia vera [M]Polycythaemia vera BBs0.00
2481.0 Diagnosis of Polycythaemia vera Polycythaemia vera Polycythaemia vera B934.00
36790.0 Diagnosis of Polycythaemia vera Polycythaemia vera Primary polycythaemia B934.12
37468.0 Diagnosis of Polycythaemia vera Polycythaemia vera Chronic erythraemia B671.00
5542.0 Diagnosis of Polycythaemia vera Polycythaemia vera Polycythaemia rubra vera B934.11
58888.0 Diagnosis of Polycythaemia vera Polycythaemia vera [M]Polycythaemia rubra vera BBs0.11
63653.0 Diagnosis of Polycythaemia vera Polycythaemia vera Heilmeyer - Schoner disease B671.11
Rows: 1
Code Description Disease Category
D45 Polycythaemia vera Polycythaemia vera Diagnosis of Polycythaemia vera

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH68/version/136/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH68/version/136/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH68', '136', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH68/version/136/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH68/version/136/export/codes/?format=json
CSV site_root/phenotypes/PH68/version/136/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH68', '136', api_client=client)

Version History

Version
ID
Name Owner Publish date
136 Polycythaemia vera ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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