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Pulmonary embolism

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH71
Version ID
142
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pulmonary embolism' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Pulmonary embolism' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Pulmonary embolism' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 10
Code Description Disease Medcode Category
14AC.00 H/O: pulmonary embolus Pulmonary embolism 10280.0 History of Pulmonary embolism
7A09300 Open embolectomy of pulmonary artery Pulmonary embolism 45740.0 Procedure for Pulmonary embolism
7A09311 Trendelenburg pulmonary embolectomy Pulmonary embolism 34687.0 Procedure for Pulmonary embolism
7A0A100 Percutaneous transluminal embolectomy of pulmonary artery Pulmonary embolism 65459.0 Procedure for Pulmonary embolism
7A0B000 Pulmonary thromboendarterectomy Pulmonary embolism 89238.0 Procedure for Pulmonary embolism
G401.00 Pulmonary embolism Pulmonary embolism 1266.0 Diagnosis of Pulmonary embolism
G401.12 Pulmonary embolus Pulmonary embolism 9701.0 Diagnosis of Pulmonary embolism
G401000 Post operative pulmonary embolus Pulmonary embolism 18121.0 Diagnosis of Pulmonary embolism
G401100 Recurrent pulmonary embolism Pulmonary embolism 96209.0 Diagnosis of Pulmonary embolism
ZV12900 [V] Personal history of pulmonary embolism Pulmonary embolism 16976.0 History of Pulmonary embolism
Rows: 10
Code Description Disease ReadcodeDescr Readcode
10280.0 History of Pulmonary embolism Pulmonary embolism H/O: pulmonary embolus 14AC.00
1266.0 Diagnosis of Pulmonary embolism Pulmonary embolism Pulmonary embolism G401.00
16976.0 History of Pulmonary embolism Pulmonary embolism [V] Personal history of pulmonary embolism ZV12900
18121.0 Diagnosis of Pulmonary embolism Pulmonary embolism Post operative pulmonary embolus G401000
34687.0 Procedure for Pulmonary embolism Pulmonary embolism Trendelenburg pulmonary embolectomy 7A09311
45740.0 Procedure for Pulmonary embolism Pulmonary embolism Open embolectomy of pulmonary artery 7A09300
65459.0 Procedure for Pulmonary embolism Pulmonary embolism Percutaneous transluminal embolectomy of pulmonary artery 7A0A100
89238.0 Procedure for Pulmonary embolism Pulmonary embolism Pulmonary thromboendarterectomy 7A0B000
96209.0 Diagnosis of Pulmonary embolism Pulmonary embolism Recurrent pulmonary embolism G401100
9701.0 Diagnosis of Pulmonary embolism Pulmonary embolism Pulmonary embolus G401.12
Rows: 1
Code Description Disease Category
I26 Pulmonary embolism Pulmonary embolism Diagnosis of Pulmonary embolism

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH71/version/142/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH71/version/142/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH71', '142', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH71/version/142/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH71/version/142/export/codes/?format=json
CSV site_root/phenotypes/PH71/version/142/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH71', '142', api_client=client)

Version History

Version
ID
Name Owner Publish date
142 Pulmonary embolism ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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