Phenotype Library | phenotype: Female pelvic inflammatory disease

Female pelvic inflammatory disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH72

Version ID

144

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Female 'Female pelvic inflammatory disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Female 'Female pelvic inflammatory disease' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/213

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C883/2905 Female pelvic inflammatory disease - Secondary care - Diagnoses - ICD10 codes

Rows: 5

Code	Description	Disease	Category
N70	Salpingitis and oophoritis	Female pelvic inflammatory disease	Diagnosis of Female pelvic inflammatory disease
N71	Inflammatory disease of uterus, except cervix	Female pelvic inflammatory disease	Diagnosis of Female pelvic inflammatory disease
N72	Inflammatory disease of cervix uteri	Female pelvic inflammatory disease	Diagnosis of Female pelvic inflammatory disease
N73	Other female pelvic inflammatory diseases	Female pelvic inflammatory disease	Diagnosis of Female pelvic inflammatory disease
N74	Female pelvic inflammatory disorders in diseases classified elsewhere	Female pelvic inflammatory disease	Diagnosis of Female pelvic inflammatory disease

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH72/version/144/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH72/version/144/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH72', '144', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH72/version/144/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH72/version/144/export/codes/?format=json
CSV	site_root/phenotypes/PH72/version/144/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH72', '144', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
144	Female pelvic inflammatory disease	ieuan.scanlon	2021-10-06	currently shown