Phenotype Library | phenotype: Polymyalgia Rheumatica

Polymyalgia Rheumatica

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH74

Version ID

148

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Polymyalgia Rheumatica' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Polymyalgia Rheumatica' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Polymyalgia Rheumatica' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/219

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C887/2913 Polymyalgia Rheumatica - Primary care - Read codes v2

Rows: 3

Code	Description	Disease	Medcode	Category
N20..00	Polymyalgia rheumatica	Polymyalgia Rheumatica	1408.0	Diagnosis of Polymyalgia Rheumatica
N20..11	Polymyalgia	Polymyalgia Rheumatica	3042.0	Diagnosis of Polymyalgia Rheumatica
N200.00	Giant cell arteritis with polymyalgia rheumatica	Polymyalgia Rheumatica	29472.0	Diagnosis of Polymyalgia Rheumatica

C888/2915 Polymyalgia Rheumatica - Primary care - Med codes

Rows: 3

Code	Description	Disease	ReadcodeDescr	Readcode
1408.0	Diagnosis of Polymyalgia Rheumatica	Polymyalgia Rheumatica	Polymyalgia rheumatica	N20..00
29472.0	Diagnosis of Polymyalgia Rheumatica	Polymyalgia Rheumatica	Giant cell arteritis with polymyalgia rheumatica	N200.00
3042.0	Diagnosis of Polymyalgia Rheumatica	Polymyalgia Rheumatica	Polymyalgia	N20..11

C889/2917 Polymyalgia Rheumatica - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
M31.5	Giant cell arteritis with polymyalgia rheumatica	Polymyalgia Rheumatica	Diagnosis of Polymyalgia Rheumatica
M35.3	Polymyalgia rheumatica	Polymyalgia Rheumatica	Diagnosis of Polymyalgia Rheumatica

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH74/version/148/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH74/version/148/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH74', '148', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH74/version/148/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH74/version/148/export/codes/?format=json
CSV	site_root/phenotypes/PH74/version/148/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH74', '148', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
148	Polymyalgia Rheumatica	ieuan.scanlon	2021-10-06	currently shown