Phenotype Library | phenotype: Hyperparathyroidism

Hyperparathyroidism

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH76

Version ID

152

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Hyperparathyroidism' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Hyperparathyroidism' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Hyperparathyroidism' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/223

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C893/2925 Hyperparathyroidism - Primary care - Read codes v2

Rows: 12

Code	Description	Disease	Medcode	Category
C120.00	Hyperparathyroidism	Hyperparathyroidism	3559.0	Diagnosis of Hyperparathyroidism
C120.11	Osteitis fibrosa cystica	Hyperparathyroidism	49456.0	Diagnosis of Hyperparathyroidism
C120.12	Von Recklinghausen's bone disease	Hyperparathyroidism	4116.0	Diagnosis of Hyperparathyroidism
C120000	Primary hyperparathyroidism	Hyperparathyroidism	18740.0	Diagnosis of Hyperparathyroidism
C120100	Hyperparathyroid bone disease	Hyperparathyroidism	73934.0	Diagnosis of Hyperparathyroidism
C120111	Osteitis fibrosa cystica	Hyperparathyroidism	19457.0	Diagnosis of Hyperparathyroidism
C120112	Von Recklinghausen's bone disease	Hyperparathyroidism	73923.0	Diagnosis of Hyperparathyroidism
C120200	Tertiary hyperparathyroidism	Hyperparathyroidism	105537.0	Diagnosis of Hyperparathyroidism
C1z3100	Ectopic hyperparathyroidism	Hyperparathyroidism	65478.0	Diagnosis of Hyperparathyroidism
Cyu4100	[X]Other hyperparathyroidism	Hyperparathyroidism	53819.0	Diagnosis of Hyperparathyroidism
K08y100	Secondary hyperparathyroidism	Hyperparathyroidism	17339.0	Diagnosis of Hyperparathyroidism
N332500	Brown tumour of hyperparathyroidism	Hyperparathyroidism	56524.0	Diagnosis of Hyperparathyroidism

C894/2927 Hyperparathyroidism - Primary care - Med codes

Rows: 12

Code	Description	Disease	ReadcodeDescr	Readcode
105537.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Tertiary hyperparathyroidism	C120200
17339.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Secondary hyperparathyroidism	K08y100
18740.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Primary hyperparathyroidism	C120000
19457.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Osteitis fibrosa cystica	C120111
3559.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Hyperparathyroidism	C120.00
4116.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Von Recklinghausen's bone disease	C120.12
49456.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Osteitis fibrosa cystica	C120.11
53819.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	[X]Other hyperparathyroidism	Cyu4100
56524.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Brown tumour of hyperparathyroidism	N332500
65478.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Ectopic hyperparathyroidism	C1z3100
73923.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Von Recklinghausen's bone disease	C120112
73934.0	Diagnosis of Hyperparathyroidism	Hyperparathyroidism	Hyperparathyroid bone disease	C120100

C895/2929 Hyperparathyroidism - Secondary care - Diagnoses - ICD10 codes

Rows: 4

Code	Description	Disease	Category
E21.0	Primary hyperparathyroidism	Hyperparathyroidism	Diagnosis of Hyperparathyroidism
E21.1	Secondary hyperparathyroidism, not elsewhere classified	Hyperparathyroidism	Diagnosis of Hyperparathyroidism
E21.2	Other hyperparathyroidism	Hyperparathyroidism	Diagnosis of Hyperparathyroidism
E21.3	Hyperparathyroidism, unspecified	Hyperparathyroidism	Diagnosis of Hyperparathyroidism

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH76/version/152/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH76/version/152/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH76', '152', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH76/version/152/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH76/version/152/export/codes/?format=json
CSV	site_root/phenotypes/PH76/version/152/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH76', '152', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
152	Hyperparathyroidism	ieuan.scanlon	2021-10-06	currently shown