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Parkinson's disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH77
Version ID
154
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Parkinson's disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Parkinson's disease' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'Parkinson's disease' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 6
Code Description Disease Medcode Category
147F.00 History of Parkinson's disease Parkinson's disease 101090.0 History of Parkinson's disease
Eu02300 [X]Dementia in Parkinson's disease Parkinson's disease 9509.0 History of Parkinson's disease
F11x900 Cerebral degeneration in Parkinson's disease Parkinson's disease 96860.0 History of Parkinson's disease
F12..00 Parkinson's disease Parkinson's disease 4321.0 Diagnosis of Parkinson's disease
F120.00 Paralysis agitans Parkinson's disease 1691.0 Diagnosis of Parkinson's disease
F12z.00 Parkinson's disease NOS Parkinson's disease 14912.0 Diagnosis of Parkinson's disease
Rows: 6
Code Description Disease ReadcodeDescr Readcode
101090.0 History of Parkinson's disease Parkinson's disease History of Parkinson's disease 147F.00
14912.0 Diagnosis of Parkinson's disease Parkinson's disease Parkinson's disease NOS F12z.00
1691.0 Diagnosis of Parkinson's disease Parkinson's disease Paralysis agitans F120.00
4321.0 Diagnosis of Parkinson's disease Parkinson's disease Parkinson's disease F12..00
9509.0 History of Parkinson's disease Parkinson's disease [X]Dementia in Parkinson's disease Eu02300
96860.0 History of Parkinson's disease Parkinson's disease Cerebral degeneration in Parkinson's disease F11x900
Rows: 2
Code Description Disease Category
F02.3 Dementia in Parkinson's disease Parkinson's disease History of Parkinson's disease
G20 Parkinson's disease Parkinson's disease Diagnosis of Parkinson's disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH77/version/154/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH77/version/154/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH77', '154', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH77/version/154/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH77/version/154/export/codes/?format=json
CSV site_root/phenotypes/PH77/version/154/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH77', '154', api_client=client)

Version History

Version
ID
Name Owner Publish date
154 Parkinson's disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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