Phenotypes > Acute Nasopharyngitis Primary care

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Acute Nasopharyngitis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

ID
PH788
Version ID
2212
Type
Disease or syndrome
Data Sources
Welsh Longitudinal General Practice Dataset (WLGP) , Clinical Practice Research Datalink AURUM , Clinical Practice Research Datalink GOLD
Valid event data range
01/01/2001 to 31/01/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-11-12
Coding system
Read codes v2 SNOMED CT codes
Collections
BREATHE Phenotype Library
Tags
No tags

Definition

  • Not found code search
  • No validations available

Implementation

Not available

Not found code search


Publications

  • No publications available

  • Code repositories

  • ID- 1 - Repository- Manchester ClinicalCodes - Description- Trends in antibiotic prescribing in primary care for clinical syndromes subject to national recommendations to reduce antibiotic resistance, UK 1995-2011: analysis of a large database of primary care consultations - Conditions- URTI - Publication- https://doi.org/10.1093/jac/dku291 - Clinical codes- Read Version 2

  • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- Ear and upper respiratory tract infections - Publication- https://doi.org/10.1016/S2589-7500(19)30012-3 - Clinical codes- ICD-10

  • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- Other or unspecified infectious organisms - Publication- https://doi.org/10.1016/S2589-7500(19)30012-4 - Clinical codes- ICD-10

Clinical Code List

Expand All  /  Collapse All
Rows: 14
Code Description SNOMED CT Concept ID SNOMED CT Description ID Read v2 BREATHE recommended
125540010 Nasopharyngeal diphtheria 75589004 Y
287914017 Nasopharyngeal myiasis 187222000 Y
3101201000006114 Nasopharynx X-ray 37307009
327931000006111 [SO]Nasopharynx 71836000
3464981000006114 Nasopharyngeal atresia 59423009
3480821000006113 Nasopharyngeal angiofibroma 60392001
3668501000006119 Nasopharynx 71836000
3904101000006116 Nasopharyngogram 86354001
411102010 Nasopharyngoscopy NEC 82941002
4716771000006114 Nasopharyngeal airway insertion 182692007
4716791000006110 NP - Nasopharyngeal airway insertion 182692007
51349016 Nasopharyngeal polyp 30677002
676561000000112 Nasopharyngeal virology swab taken 439578005
676621000000115 Nasopharyngeal virology swab received 441366006
Rows: 1
Code Description CPRD GOLD Med BREATHE recommended Manchester Clinical Codes 1
H00..00 Acute nasopharyngitis Y Y
Rows: 2
Code Description
125540010 Nasopharyngeal diphtheria
287914017 Nasopharyngeal myiasis
Rows: 1
Code Description
H00..00 Acute nasopharyngitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH788/version/2212/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH788/version/2212/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH788', '2212', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH788/version/2212/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH788/version/2212/export/codes/?format=json
CSV site_root/phenotypes/PH788/version/2212/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH788', '2212', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2212 Acute Nasopharyngitis Primary care zinnurar 2022-08-08 currently shown
1655 Acute Nasopharyngitis Primary care zinnurar 2022-01-17

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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