Phenotypes > Acute Nasopharyngitis Secondary care

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Acute Nasopharyngitis Secondary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

Type
Disease or syndrome
ID
PH789
Version ID
2213
Data Sources
Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Annual District Death Extract , Patient Episode Dataset for Wales
Valid event data range
01/01/2001 to 31/01/2021
Sex
Female/Male
Agreement Date
2021-11-12
Coding system
ICD10 codes
Tags /Collections
BREATHE Phenotype Library

Definition

  • Not found code search
  • No validations available

Implementation

Not available

Not found code search


Publications

  • No publications available

  • Code repositories

  • ID- 1 - Repository- Manchester ClinicalCodes - Description- Trends in antibiotic prescribing in primary care for clinical syndromes subject to national recommendations to reduce antibiotic resistance, UK 1995-2011: analysis of a large database of primary care consultations - Conditions- URTI - Publication- https://doi.org/10.1093/jac/dku291 - Clinical codes- Read Version 2

  • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- Ear and upper respiratory tract infections - Publication- https://doi.org/10.1016/S2589-7500(19)30012-3 - Clinical codes- ICD-10

  • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- Other or unspecified infectious organisms - Publication- https://doi.org/10.1016/S2589-7500(19)30012-4 - Clinical codes- ICD-10

Clinical Code List

Expand All  /  Collapse All
Rows: 3
Code Description BREATHE recommended HDR UK National Phenomics Resource Project 2 HDR UK National Phenomics Resource Project 3
A36.1 Nasopharyngeal diphtheria Y Y
B87.3 Nasopharyngeal myiasis Y Y
J00 Acute nasopharyngitis [common cold] Y Y Y
Rows: 3
Code Description
A36.1 Nasopharyngeal diphtheria
B87.3 Nasopharyngeal myiasis
J00 Acute nasopharyngitis [common cold]

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH789/version/2213/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH789/version/2213/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH789', '2213', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH789/version/2213/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH789/version/2213/export/codes/?format=json
CSV site_root/phenotypes/PH789/version/2213/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH789', '2213', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2213 Acute Nasopharyngitis Secondary care zinnurar 2022-08-08 currently shown
1657 Acute Nasopharyngitis Secondary care zinnurar 2022-01-17

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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