Phenotype Library | phenotype: Respiratory distress of newborn

Respiratory distress of newborn

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH79

Version ID

158

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Respiratory distress of newborn IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Respiratory distress of newborn diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date OR Secondary care
ALL diagnoses of Respiratory distress of newborn or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/234

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C902/2943 Respiratory distress of newborn - Primary care - Read codes v2

Rows: 7

Code	Description	Disease	Medcode	Category
Q30..00	Respiratory distress syndrome	Respiratory distress of newborn	2737.0	Diagnosis of Respiratory distress of newborn
Q30..11	Hyaline membrane disease	Respiratory distress of newborn	3883.0	Diagnosis of Respiratory distress of newborn
Q30..12	Pulmonary hypoperfusion syndrome of newborn	Respiratory distress of newborn	97418.0	Diagnosis of Respiratory distress of newborn
Q316.00	Newborn transitory tachypnoea	Respiratory distress of newborn	3007.0	Diagnosis of Respiratory distress of newborn
Q316.11	Wet lung syndrome in newborn	Respiratory distress of newborn	43218.0	Diagnosis of Respiratory distress of newborn
Q31y200	Perinatal respiratory distress NOS	Respiratory distress of newborn	26684.0	Diagnosis of Respiratory distress of newborn
Qyu3000	[X]Other respiratory distress of newborn	Respiratory distress of newborn	72704.0	Diagnosis of Respiratory distress of newborn

C903/2945 Respiratory distress of newborn - Primary care - Med codes

Rows: 7

Code	Description	Disease	ReadcodeDescr	Readcode
26684.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Perinatal respiratory distress NOS	Q31y200
2737.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Respiratory distress syndrome	Q30..00
3007.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Newborn transitory tachypnoea	Q316.00
3883.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Hyaline membrane disease	Q30..11
43218.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Wet lung syndrome in newborn	Q316.11
72704.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	[X]Other respiratory distress of newborn	Qyu3000
97418.0	Diagnosis of Respiratory distress of newborn	Respiratory distress of newborn	Pulmonary hypoperfusion syndrome of newborn	Q30..12

C904/2947 Respiratory distress of newborn - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
P22	Respiratory distress of newborn	Respiratory distress of newborn	Diagnosis of Respiratory distress of newborn

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH79/version/158/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH79/version/158/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH79', '158', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH79/version/158/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH79/version/158/export/codes/?format=json
CSV	site_root/phenotypes/PH79/version/158/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH79', '158', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
158	Respiratory distress of newborn	ieuan.scanlon	2021-10-06	currently shown