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Aspergillosis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

Type
Disease or syndrome
ID
PH790
Version ID
2214
Valid event data range
01/01/2001 to 31/01/2021
Sex
Female/Male
Agreement Date
2021-11-12
Coding system
Read codes v2 SNOMED CT codes
Tags /Collections
BREATHE Phenotype Library

Definition

  • Not found code search
  • Not available

Implementation

Not available

Not found code search


Publications

  • No publications were found via PubMed in the last 12 months

  • Code repositories

  • ID- 1 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.2 Tonsillar aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-ear-urti-gtxr2v6qtbyiemfrchdvzr - Clinical codes- B44.2 Tonsillar aspergillosis

  • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.7 Disseminated aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.7 Disseminated aspergillosis

  • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.8 Other forms of aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.8 Other forms of aspergillosis

  • ID- 4 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.9 Aspergillosis, unspecified - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.9 Aspergillosis, unspecified

  • ID- 5 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.0 Invasive pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.0 Invasive pulmonary aspergillosis

  • ID- 6 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.1 Other pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.1 Other pulmonary aspergillosis

  • ID- 7 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- H246.00 Pneumonia with aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/axson-pneumonia-gl46c8plqmdpuj7qupteh9 - Clinical codes- H246.00 Pneumonia with aspergillosis

  • ID- 8 - Repository- LSHTM Data Compass - Description- Clinical codelist: Read codes and terms used for pneumonia (CPRD) - Conditions- H246.00,Pneumonia with aspergillosis - Publication- https://doi.org/10.17037/DATA.00001654 - Clinical codes- H246.00 Pneumonia with aspergillosis

Clinical Code List

Rows: 23
Code Description SNOMED CT Concept ID SNOMED CT Description ID Read v2 BREATHE recommended
1174251000000119 Aspergillus bronchitis 445058002 2871249017 AB63600 Y
133401000000117 Aspergillus serology 1009161000000109 2561811000000119 4JDC.00 N
1709191000006112 Aspergillus bronchitis 1709191000006108 1709191000006112 Y
1759711000006110 Aspergillus terreus 26406003 44227019 Y
1759721000006119 Aspergillus niger 89354002 148154018 Y
1761701000006115 Aspergillus fumigatus 32684000 54560013 Y
1786369019 Aspergillus nucleic acid detection 999711000000102 2584191000000115 43jH.00 Y
1793151000000113 Aspergillus galactomannan antigen detection 1002311000000104 2572031000000115 43kA.00 N
193491000006112 Pulmonary aspergillus disease 6042001 11040014 AB63400 Y
216248013 Aspergillus fumigatus 1 antibody level 999011000000104 2560101000000117 43fA.00 N
216249017 Aspergillus fumigatus 2 antibody level 999021000000105 2572821000000114 43fB.00 N
2352331000000118 Aspergillus nucleic acid detection assay 999711000000102 2584191000000115 43jH000 N
2537721000006113 Aspergillus species 2429008 3028676013 Y
2666231000006116 Intracavitary aspergillus fungus ball 10446001 1219054011 Y
2914521000006112 Alveolitis due to Aspergillus clavatus AND/OR fumigatus 25897000 43391015 Y
353241000000112 Aspergillus antigen level 996121000000102 2569051000000113 43fH.00 N
4200931000006116 Aspergillus pneumonia 111900000 187903016 Y
459539017 Aspergillus fumigatus 1 precipitin level 1026321000000104 2602821000000110 43f0.00 N
459540015 Aspergillus fumigatus 2 precipitin level 1026331000000102 2602791000000117 43f1.00 N
483451000000113 Aspergillus niger RAST test 996091000000103 2555221000000115 43tG.00 N
494701000006114 Aspergillus fumigatus RAST test 1012431000000102 2565181000000118 43Q5.00 N
975701000006115 Aspergillus fumigatus IgG level 1019051000000107 2583601000000119 43fF.00 N
No found code Pneumonia with aspergillosis 111900000 1219703018 H246.00 Y
Rows: 13
Code Description CPRD GOLD Med BREATHE recommended
43Q5.00 Aspergillus fumigatus RAST test 29227 N
43f0.00 Aspergillus fumigatus 1 precipitin level 27189 N
43f1.00 Aspergillus fumigatus 2 precipitin level 43274 N
43fA.00 Aspergillus fumigatus 1 antibody level 38231 N
43fB.00 Aspergillus fumigatus 2 antibody level 46382 N
43fF.00 Aspergillus fumigatus IgG level 59973 N
43fH.00 Aspergillus antigen level 57835 N
43jH.00 Aspergillus nucleic acid detection 111024 N
43kA.00 Aspergillus galactomannan antigen detection 107289 N
43tG.00 Aspergillus niger RAST test 92047 N
4JDC.00 Aspergillus serology 23151 N
AB63400 Pulmonary aspergillus disease 11440 Y
AB63600 Aspergillus bronchitis 100650 Y
Rows: 12
Code Description
1174251000000119 Aspergillus bronchitis
1709191000006112 Aspergillus bronchitis
1759711000006110 Aspergillus terreus
1759721000006119 Aspergillus niger
1761701000006115 Aspergillus fumigatus
1786369019 Aspergillus nucleic acid detection
193491000006112 Pulmonary aspergillus disease
2537721000006113 Aspergillus species
2666231000006116 Intracavitary aspergillus fungus ball
2914521000006112 Alveolitis due to Aspergillus clavatus AND/OR fumigatus
4200931000006116 Aspergillus pneumonia
No found code Pneumonia with aspergillosis
Rows: 2
Code Description
AB63400 Pulmonary aspergillus disease
AB63600 Aspergillus bronchitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH790/version/2214/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH790/version/2214/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH790', '2214', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH790/version/2214/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH790/version/2214/export/codes/?format=json
CSV site_root/phenotypes/PH790/version/2214/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH790', '2214', api_client=client)

Version History

Version
ID
Name Owner Publish date
2214 Aspergillosis Primary care zinnurar 2022-08-08 currently shown
1659 Aspergillosis Primary care zinnurar 2022-01-17

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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