Aspergillosis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

PH790 / 1659 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/2001 to 31/01/2021
    Coding System
    Read codes v2SNOMED CT codes
    Data Sources
    Hospital Episode Statistics Admitted Patient Care, UK Biobank, CPRD Aurum, Office of National Statistics (ONS), CPRD GOLD
    Collections
    BREATHEPhenotype Library
    Tags
    No data

  2. Definition

    • Not found code search
    • Not available

  3. Implementation

    Implementation

    Not available

    Not found code search

  4. Clinical Code List

  5. Publication

    • No publications were found via PubMed in the last 12 months

    • Code repositories

    • ID- 1 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.2 Tonsillar aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-ear-urti-gtxr2v6qtbyiemfrchdvzr - Clinical codes- B44.2 Tonsillar aspergillosis

    • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.7 Disseminated aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.7 Disseminated aspergillosis

    • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.8 Other forms of aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.8 Other forms of aspergillosis

    • ID- 4 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.9 Aspergillosis, unspecified - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.9 Aspergillosis, unspecified

    • ID- 5 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.0 Invasive pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.0 Invasive pulmonary aspergillosis

    • ID- 6 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.1 Other pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.1 Other pulmonary aspergillosis

    • ID- 7 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- H246.00 Pneumonia with aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/axson-pneumonia-gl46c8plqmdpuj7qupteh9 - Clinical codes- H246.00 Pneumonia with aspergillosis

    • ID- 8 - Repository- LSHTM Data Compass - Description- Clinical codelist: Read codes and terms used for pneumonia (CPRD) - Conditions- H246.00,Pneumonia with aspergillosis - Publication- https://doi.org/10.17037/DATA.00001654 - Clinical codes- H246.00 Pneumonia with aspergillosis

      (DOI:10.17037/DATA.00001654)

    Citation Example

    Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou. PH790 / 1659 - Aspergillosis Primary care. Phenotype Library [Online]. 17 January 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH790/version/1659/detail/. [Accessed 24 November 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH790/version/1659/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH790',
     version_id=1659
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH790',
     version_id=1659
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH790/version/1659/export/codes/?format=json
    CSV site_root/phenotypes/PH790/version/1659/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH790',
     version_id=1659
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH790',
     version_id=1659
    )

  7. Version History

    Version IDNameOwnerPublish date
    2214 Aspergillosis Primary care zinnurar2022-08-08
    1659 Aspergillosis Primary care zinnurar2022-01-17currently shown