Phenotypes > Aspergillosis Secondary care

Print

Aspergillosis Secondary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

ID
PH791
Version ID
2215
Type
Disease or syndrome
Data Sources
Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Annual District Death Extract , Patient Episode Dataset for Wales
Valid event data range
01/01/2001 to 31/01/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-11-12
Coding system
ICD10 codes ICD11 codes
Collections
BREATHE Phenotype Library
Tags
No tags

Definition

  • Not found code search
  • Not available

Implementation

Not available

Not found code search


Publications

  • No publications were found via PubMed in the last 12 months

  • Code repositories

  • ID- 1 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.2 Tonsillar aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-ear-urti-gtxr2v6qtbyiemfrchdvzr - Clinical codes- B44.2 Tonsillar aspergillosis

  • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.7 Disseminated aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.7 Disseminated aspergillosis

  • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.8 Other forms of aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.8 Other forms of aspergillosis

  • ID- 4 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.9 Aspergillosis, unspecified - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.9 Aspergillosis, unspecified

  • ID- 5 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.0 Invasive pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.0 Invasive pulmonary aspergillosis

  • ID- 6 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.1 Other pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.1 Other pulmonary aspergillosis

  • ID- 7 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- H246.00 Pneumonia with aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/axson-pneumonia-gl46c8plqmdpuj7qupteh9 - Clinical codes- H246.00 Pneumonia with aspergillosis

  • ID- 8 - Repository- LSHTM Data Compass - Description- Clinical codelist: Read codes and terms used for pneumonia (CPRD) - Conditions- H246.00,Pneumonia with aspergillosis - Publication- https://doi.org/10.17037/DATA.00001654 - Clinical codes- H246.00 Pneumonia with aspergillosis

Clinical Code List

Expand All  /  Collapse All
Rows: 11
Code Description BREATHE recommended
1F20.0 Invasive aspergillosis Y
1F20.00 Invasive aspergillosis of the digestive tract Y
1F20.01 Invasive cerebral aspergillosis Y
1F20.02 Disseminated aspergillosis N
1F20.1 Non-invasive aspergillosis Y
1F20.10 Aspergillus otomycosis Y
1F20.11 Chronic aspergillosis of the paranasal sinuses Y
1F20.12 Chronic pulmonary aspergillosis Y
1F20.13 Tonsillar aspergillosis Y
1F20.Z Aspergillosis, unspecified Y
CA82.4 Aspergillus-induced allergic or hypersensitivity conditions Y
Rows: 7
Code Description BREATHE recommended
B44.0 Invasive pulmonary aspergillosis Y
B44.1 Other pulmonary aspergillosis Y
B44.2 Tonsillar aspergillosis N
B44.7 Disseminated aspergillosis N
B44.8 Other forms of aspergillosis N
B44.9 Aspergillosis, unspecified N
H246.00 Pneumonia with aspergillosis Y
Rows: 10
Code Description
1F20.0 Invasive aspergillosis
1F20.00 Invasive aspergillosis of the digestive tract
1F20.01 Invasive cerebral aspergillosis
1F20.1 Non-invasive aspergillosis
1F20.10 Aspergillus otomycosis
1F20.11 Chronic aspergillosis of the paranasal sinuses
1F20.12 Chronic pulmonary aspergillosis
1F20.13 Tonsillar aspergillosis
1F20.Z Aspergillosis, unspecified
CA82.4 Aspergillus-induced allergic or hypersensitivity conditions
Rows: 3
Code Description
B44.0 Invasive pulmonary aspergillosis
B44.1 Other pulmonary aspergillosis
H246.00 Pneumonia with aspergillosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH791/version/2215/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH791/version/2215/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH791', '2215', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH791/version/2215/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH791/version/2215/export/codes/?format=json
CSV site_root/phenotypes/PH791/version/2215/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH791', '2215', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2215 Aspergillosis Secondary care zinnurar 2022-08-08 currently shown
1661 Aspergillosis Secondary care zinnurar 2022-01-17

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.