Aspergillosis Secondary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

PH791 / 2215 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/2001 to 31/01/2021
    Coding System
    ICD10 codesICD11 codes
    Data Sources
    Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Annual District Death Extract , Patient Episode Dataset for Wales
    Collections
    BREATHEPhenotype Library
    Tags
    No data

  2. Definition

    • Not found code search
    • Not available

  3. Implementation

    Implementation

    Not available

    Not found code search

  4. Clinical Code List

  5. Publication

    • No publications were found via PubMed in the last 12 months

    • Code repositories

    • ID- 1 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.2 Tonsillar aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-ear-urti-gtxr2v6qtbyiemfrchdvzr - Clinical codes- B44.2 Tonsillar aspergillosis

    • ID- 2 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.7 Disseminated aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.7 Disseminated aspergillosis

    • ID- 3 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.8 Other forms of aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.8 Other forms of aspergillosis

    • ID- 4 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.9 Aspergillosis, unspecified - Publication- https://portal.caliberresearch.org/phenotypes/kuan-oth-organs-7yqx9fgz3m2d6uckxu7b4q - Clinical codes- B44.9 Aspergillosis, unspecified

    • ID- 5 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.0 Invasive pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.0 Invasive pulmonary aspergillosis

    • ID- 6 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- B44.1 Other pulmonary aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/kuan-lrti-rddq59rszjqvlptmk5vecd - Clinical codes- B44.1 Other pulmonary aspergillosis

    • ID- 7 - Repository- HDR UK National Phenomics Resource Project - Description- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service - Conditions- H246.00 Pneumonia with aspergillosis - Publication- https://portal.caliberresearch.org/phenotypes/axson-pneumonia-gl46c8plqmdpuj7qupteh9 - Clinical codes- H246.00 Pneumonia with aspergillosis

    • ID- 8 - Repository- LSHTM Data Compass - Description- Clinical codelist: Read codes and terms used for pneumonia (CPRD) - Conditions- H246.00,Pneumonia with aspergillosis - Publication- https://doi.org/10.17037/DATA.00001654 - Clinical codes- H246.00 Pneumonia with aspergillosis

      (DOI:10.17037/DATA.00001654)

    Citation Requirements

    No data

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH791/version/2215/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH791',
     version_id=2215
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH791',
     version_id=2215
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH791/version/2215/export/codes/?format=json
    CSV site_root/phenotypes/PH791/version/2215/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH791',
     version_id=2215
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH791',
     version_id=2215
    )

  7. Version History

    Version IDNameOwnerPublish date
    2215 Aspergillosis Secondary care zinnurar2022-08-08currently shown
    1661 Aspergillosis Secondary care zinnurar2022-01-17