Bronchiolitis Primary care
Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou
PH792 / 2216 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromePhenotype UUIDexcel-breathe-idOI14VSexBothValid Event Date Range01/01/2001 to 31/01/2021Coding SystemRead codes v2CTV3 codesCollectionsBREATHEPhenotype LibraryTagsNo dataDefinition
- Not found code search
- Not available
Implementation
Implementation
These codes are not intended to be mandatory, but are to be used as a starting point for the identification of Acute Bronchiolitis in routine Electronic Health Record (EHR). Each study may differ in the sensitivity and specificity of the coding required.
According to the National Health Service (NHS), Bronchiolitis is defined as a common lower respiratory tract infection that affects babies and young children under 2 years old.
https://www.nhs.uk/conditions/bronchiolitis/
According to the National Institute for Health and Care Excellence (NICE) guidelines, a Bronchiolitis diagnosis can me made if the child has a coryzal prodrome lasting 1 to 3 days, followed by: persistent cough and either tachypnoea or chest recession (or both) and either wheeze or crackles on chest auscultation (or both).
https://www.nice.org.uk/guidance/ng9/chapter/Key-priorities-for-implementation
It is therefore recommended that these codes are used for individuals with a respiratory tract infection restricted to lower respiratory tract in young children under 2 years old.
Not found code search
Clinical Code List
PUBLISHED - 16 Codes
PUBLISHED - 13 Codes
PUBLISHED - 16 Codes
PUBLISHED - 9 Codes
Publication
Publications in 2020-2021 identified in PubMed
Reyburn R, Tuivaga E, Nguyen CD, Ratu FT, Nand D, Kado J, Tikoduadua L, Jenkins K, de Campo M, Kama M, Devi R, Rafai E, Weinberger DM, Mulholland EK, Russell FM. Effect of ten-valent pneumococcal conjugate vaccine introduction on pneumonia hospital admissions in Fiji: a time-series analysis. Lancet Glob Health. 2021 Jan;9(1):e91-e98. doi: 10.1016/S2214-109X(20)30421-6. Epub 2020 Nov 20. PMID: 33227258.
(DOI:10.1016/S2214-109X(20)30421-6)Code repositories
ID- 1 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21
ID- 2 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to respiratory syncytial virus - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.0
ID- 3 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to human metapneumovirus - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.1
ID- 4 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.8
ID- 5 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis, unspecified - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infecti - Clinical codes- J21.9
ID- 6 - Repository- Manchester ClinicalCodes - Description- Acute bronchitis and bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H06..00
ID- 7 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061.00
ID- 8 - Repository- Manchester ClinicalCodes - Description- Acute capillary bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061000
ID- 9 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis with bronchospasm - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061200
ID- 10 - Repository- Manchester ClinicalCodes - Description- Acute exudative bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061300
ID- 11 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061z00
ID- 12 - Repository- Manchester ClinicalCodes - Description- Acute bronchitis or bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H06z.00
ID- 13 - Repository- HDR UK National Phenomics Resource Project - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- Diagnosis of Lower Respiratory Tract Infections - Clinical codes- J21
ID- 14 - Repository- OpenSAFELY - Description- [X]Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- Hyu11
ID- 15 - Repository- OpenSAFELY - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H061.
ID- 16 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to adenovirus - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X100D
ID- 17 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to human metapneumovirus - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- XaYYt
ID- 18 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0616
ID- 19 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to respiratory syncytial virus - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0615
ID- 20 - Repository- OpenSAFELY - Description- Acute bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H061z
ID- 21 - Repository- OpenSAFELY - Description- Acute bronchiolitis with bronchospasm - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0612
ID- 22 - Repository- OpenSAFELY - Description- Acute bronchitis and bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H06..
ID- 23 - Repository- OpenSAFELY - Description- Acute bronchitis or bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H06z.
ID- 24 - Repository- OpenSAFELY - Description- Acute capillary bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0610
ID- 25 - Repository- OpenSAFELY - Description- Acute exudative bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0613
ID- 26 - Repository- OpenSAFELY - Description- Acute obliterating bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0611
ID- 27 - Repository- OpenSAFELY - Description- Acute viral bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X100C
ID- 28 - Repository- OpenSAFELY - Description- Bronchiolitis obliterans - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- X101l
ID- 29 - Repository- OpenSAFELY - Description- Bronchiolitis obliterans with usual interstitial pneumonitis - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X102z
Citation Example
Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou. PH792 / 2216 - Bronchiolitis Primary care. Phenotype Library [Online]. 04 August 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH792/version/2216/detail/. [Accessed 08 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH792/version/2216/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH792',
version_id=2216
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH792',
version_id=2216
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH792/version/2216/export/codes/?format=json CSV site_root/phenotypes/PH792/version/2216/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH792',
version_id=2216
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH792',
version_id=2216
)Version History