Bronchiolitis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

PH792 / 2216 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/2001 to 31/01/2021
    Coding System
    Read codes v2CTV3 codes
    Data Sources
    Welsh Longitudinal General Practice Dataset (WLGP), Clinical Practice Research Datalink AURUM, Clinical Practice Research Datalink GOLD
    Collections
    BREATHEPhenotype Library
    Tags
    No data

  2. Definition

    • Not found code search
    • Not available

  3. Implementation

    Implementation

    These codes are not intended to be mandatory, but are to be used as a starting point for the identification of Acute Bronchiolitis in routine Electronic Health Record (EHR). Each study may differ in the sensitivity and specificity of the coding required.

    According to the National Health Service (NHS), Bronchiolitis is defined as a common lower respiratory tract infection that affects babies and young children under 2 years old.

    https://www.nhs.uk/conditions/bronchiolitis/

    According to the National Institute for Health and Care Excellence (NICE) guidelines, a Bronchiolitis diagnosis can me made if the child has a coryzal prodrome lasting 1 to 3 days, followed by: persistent cough and either tachypnoea or chest recession (or both) and either wheeze or crackles on chest auscultation (or both).

    https://www.nice.org.uk/guidance/ng9/chapter/Key-priorities-for-implementation

    It is therefore recommended that these codes are used for individuals with a respiratory tract infection restricted to lower respiratory tract in young children under 2 years old.

    Not found code search

  4. Clinical Code List

  5. Publication

    • Publications in 2020-2021 identified in PubMed

    • Reyburn R, Tuivaga E, Nguyen CD, Ratu FT, Nand D, Kado J, Tikoduadua L, Jenkins K, de Campo M, Kama M, Devi R, Rafai E, Weinberger DM, Mulholland EK, Russell FM. Effect of ten-valent pneumococcal conjugate vaccine introduction on pneumonia hospital admissions in Fiji: a time-series analysis. Lancet Glob Health. 2021 Jan;9(1):e91-e98. doi: 10.1016/S2214-109X(20)30421-6. Epub 2020 Nov 20. PMID: 33227258.

      (DOI:10.1016/S2214-109X(20)30421-6)

    • Code repositories

    • ID- 1 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21

    • ID- 2 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to respiratory syncytial virus - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.0

    • ID- 3 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to human metapneumovirus - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.1

    • ID- 4 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infection ICD-10 - Clinical codes- J21.8

    • ID- 5 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis, unspecified - Conditions- Acute Bronchiolitis - Publication- res52: respiratory tract infecti - Clinical codes- J21.9

    • ID- 6 - Repository- Manchester ClinicalCodes - Description- Acute bronchitis and bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H06..00

    • ID- 7 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061.00

    • ID- 8 - Repository- Manchester ClinicalCodes - Description- Acute capillary bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061000

    • ID- 9 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis with bronchospasm - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061200

    • ID- 10 - Repository- Manchester ClinicalCodes - Description- Acute exudative bronchiolitis - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061300

    • ID- 11 - Repository- Manchester ClinicalCodes - Description- Acute bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H061z00

    • ID- 12 - Repository- Manchester ClinicalCodes - Description- Acute bronchitis or bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- res70: LRTI - Clinical codes- H06z.00

    • ID- 13 - Repository- HDR UK National Phenomics Resource Project - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- Diagnosis of Lower Respiratory Tract Infections - Clinical codes- J21

    • ID- 14 - Repository- OpenSAFELY - Description- [X]Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- Hyu11

    • ID- 15 - Repository- OpenSAFELY - Description- Acute bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H061.

    • ID- 16 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to adenovirus - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X100D

    • ID- 17 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to human metapneumovirus - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- XaYYt

    • ID- 18 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to other specified organisms - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0616

    • ID- 19 - Repository- OpenSAFELY - Description- Acute bronchiolitis due to respiratory syncytial virus - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0615

    • ID- 20 - Repository- OpenSAFELY - Description- Acute bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H061z

    • ID- 21 - Repository- OpenSAFELY - Description- Acute bronchiolitis with bronchospasm - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0612

    • ID- 22 - Repository- OpenSAFELY - Description- Acute bronchitis and bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H06..

    • ID- 23 - Repository- OpenSAFELY - Description- Acute bronchitis or bronchiolitis NOS - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H06z.

    • ID- 24 - Repository- OpenSAFELY - Description- Acute capillary bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0610

    • ID- 25 - Repository- OpenSAFELY - Description- Acute exudative bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0613

    • ID- 26 - Repository- OpenSAFELY - Description- Acute obliterating bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- H0611

    • ID- 27 - Repository- OpenSAFELY - Description- Acute viral bronchiolitis - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X100C

    • ID- 28 - Repository- OpenSAFELY - Description- Bronchiolitis obliterans - Conditions- Acute Bronchiolitis - Publication- CTV3Map_Code_And_Term - Clinical codes- X101l

    • ID- 29 - Repository- OpenSAFELY - Description- Bronchiolitis obliterans with usual interstitial pneumonitis - Conditions- Acute Bronchiolitis - Publication- CTV3_Children - Clinical codes- X102z

    Citation Example

    Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou. PH792 / 2216 - Bronchiolitis Primary care. Phenotype Library [Online]. 04 August 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH792/version/2216/detail/. [Accessed 21 November 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH792/version/2216/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH792',
     version_id=2216
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH792',
     version_id=2216
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH792/version/2216/export/codes/?format=json
    CSV site_root/phenotypes/PH792/version/2216/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH792',
     version_id=2216
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH792',
     version_id=2216
    )

  7. Version History

    Version IDNameOwnerPublish date
    2216 Bronchiolitis Primary care zinnurar2022-08-08currently shown
    1663 Bronchiolitis Primary care zinnurar2022-01-17